PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4q16C_

Fold library id	PDB Header	Molecule	Title
c4q16C_	PDB header: ligase	Chain: C: PDB Molecule: nh(3)-dependent nad(+) synthetase;	PDBTitle: structure of nad+ synthetase from deinococcus radiodurans

Links to external resources
Added to library: Sat Apr 18 08:12:58 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L R S H I I R E L H V Q P D I D P G A E V E R R V A F L C D Y L Q S T P T K G F V L G I S G G Q D S T L A G R L C Q L A V E R R R S Q G H G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T
S S
T S S
S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A T F L A V R L P Y G V Q A D E A D A Q Q A L D F I Q A D R E V T V N I K E A A D A S V A A A Q A A L G S E V R D F V R G N V K A R E R M V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S T T
S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A Q Y A L A G Q E N L L V V G T D H A A E A L T G F Y T K Y G D G G V D L T P L S G L T K R Q G A Q L L A H L G A P E G T W D E V A L G V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
B
T
S
T T T T T
S B
T T T T
T T
G G G
S S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . .

Sequence Y A Q I D A Y L E G R E V S D E A A A R L E R L F L N S R H K R A L P V T P F D G W W Q P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
T S G G G G S
T T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	R	S	H	I	I	R	E	L	H	V	Q	P	D	I	D	P	G	A	E	V	E	R	R	V	A	F	L	C	D	Y	L	Q	S	T	P	T	K	G	F	V	L	G	I	S	G	G	Q	D	S	T	L	A	G	R	L	C	Q	L	A	V	E	R	R	R	S	Q	G	H	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T					T	T	T	T			S	S																				T	S	S										S	S																				T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	T	F	L	A	V	R	L	P	Y	G	V	Q	A	D	E	A	D	A	Q	Q	A	L	D	F	I	Q	A	D	R	E	V	T	V	N	I	K	E	A	A	D	A	S	V	A	A	A	Q	A	A	L	G	S	E	V	R	D	F	V	R	G	N	V	K	A	R	E	R	M	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S	S		S	S	T	T												S							T																T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	Q	Y	A	L	A	G	Q	E	N	L	L	V	V	G	T	D	H	A	A	E	A	L	T	G	F	Y	T	K	Y	G	D	G	G	V	D	L	T	P	L	S	G	L	T	K	R	Q	G	A	Q	L	L	A	H	L	G	A	P	E	G	T	W	D	E	V	A	L	G	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T				B											T		S		T	T	T	T	T			S	B		T	T	T	T													T	T			G	G	G					S	S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Sequence	Y	A	Q	I	D	A	Y	L	E	G	R	E	V	S	D	E	A	A	A	R	L	E	R	L	F	L	N	S	R	H	K	R	A	L	P	V	T	P	F	D	G	W	W	Q	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S	S															T	S	G	G	G	G	S					T	T			S	S