PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4ppuA_

Fold library id	PDB Header	Molecule	Title
c4ppuA_	PDB header: isomerase	Chain: A: PDB Molecule: chorismate mutase 1, chloroplastic;	PDBTitle: crystal structure of atcm1 with tyrosine bound in allosteric site

Links to external resources
Added to library: Sat Sep 6 08:40:38 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R V D E S E S L T L E G I R N S L I R Q E D S I I F G L L E R A K Y C Y N A D T Y D P T A F D M D G F N G S L V E Y M V K G T E K L H A K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S
S S G G G T T S
G G G G
T T S S
B T T B
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G R F K S P D E H P F F P D D L P E P M L P P L Q Y P K V L H F A A D S I N I N K K I W N M Y F R D L V P R L V K K G D D G N Y G S T A V C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G S T T
S
G G G
S S
B
S
S
G G G G G
T T S
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D A I C L Q C L S K R I H Y G K F V A E A K F Q A S P E A Y E S A I K A Q D K D A L M D M L T F P T V E D A I K K R V E M K T R T Y G Q E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S
S
B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . .

Sequence K V Y K I S P I L V G D L Y G D W I M P L T K E V Q V E Y L L R R L D Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S S
T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	V	D	E	S	E	S	L	T	L	E	G	I	R	N	S	L	I	R	Q	E	D	S	I	I	F	G	L	L	E	R	A	K	Y	C	Y	N	A	D	T	Y	D	P	T	A	F	D	M	D	G	F	N	G	S	L	V	E	Y	M	V	K	G	T	E	K	L	H	A	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B			S			S	S	G	G	G																				T	T	S				G	G	G	G		T	T	S	S		B	T	T	B		S																T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	R	F	K	S	P	D	E	H	P	F	F	P	D	D	L	P	E	P	M	L	P	P	L	Q	Y	P	K	V	L	H	F	A	A	D	S	I	N	I	N	K	K	I	W	N	M	Y	F	R	D	L	V	P	R	L	V	K	K	G	D	D	G	N	Y	G	S	T	A	V	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	G	G	G	S	T	T				S		G	G	G					S	S				B			S		S		G	G	G	G	G														T	T					S		S	S			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	A	I	C	L	Q	C	L	S	K	R	I	H	Y	G	K	F	V	A	E	A	K	F	Q	A	S	P	E	A	Y	E	S	A	I	K	A	Q	D	K	D	A	L	M	D	M	L	T	F	P	T	V	E	D	A	I	K	K	R	V	E	M	K	T	R	T	Y	G	Q	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T																						T	T									S																					S		B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Sequence	K	V	Y	K	I	S	P	I	L	V	G	D	L	Y	G	D	W	I	M	P	L	T	K	E	V	Q	V	E	Y	L	L	R	R	L	D	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B	S	S													T														T	T	T