PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4pn7A_

Fold library id	PDB Header	Molecule	Title
c4pn7A_	PDB header: transcription	Chain: A: PDB Molecule: putative transcription factor;	PDBTitle: crystal structure of the tfiih p34 n-terminal domain

Links to external resources
Added to library: Sat Jul 26 08:23:01 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N T D D I P S L R T I I I D T N P R A W A A L A D V L P L S K A I A N I L I F V N A H L A F S N S N Q V A I I A S H T N R A V W L Y P Q P I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T T T
T T
S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G K Y P Q F A Q I E K S L L S S I R A L M D D T T P S D L D T T T T Q I S G A L T L A L A H I N K T A L S L T A S N T A A A A G L H A R I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G T
T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . .

Sequence I I S V S D S S A A Q Y I P T M N A V F A A A H A R I A I D T L A L R G S A T F L E Q A S F I T R G T F I R A A E P R G L L Q Y L M F G F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G T T
S S S
T T
S
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	T	D	D	I	P	S	L	R	T	I	I	I	D	T	N	P	R	A	W	A	A	L	A	D	V	L	P	L	S	K	A	I	A	N	I	L	I	F	V	N	A	H	L	A	F	S	N	S	N	Q	V	A	I	I	A	S	H	T	N	R	A	V	W	L	Y	P	Q	P	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S																		T	T	T	T																						T	T										S	S							S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	K	Y	P	Q	F	A	Q	I	E	K	S	L	L	S	S	I	R	A	L	M	D	D	T	T	P	S	D	L	D	T	T	T	T	Q	I	S	G	A	L	T	L	A	L	A	H	I	N	K	T	A	L	S	L	T	A	S	N	T	A	A	A	A	G	L	H	A	R	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	G	G	G																		T							T																														S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Sequence	I	I	S	V	S	D	S	S	A	A	Q	Y	I	P	T	M	N	A	V	F	A	A	A	H	A	R	I	A	I	D	T	L	A	L	R	G	S	A	T	F	L	E	Q	A	S	F	I	T	R	G	T	F	I	R	A	A	E	P	R	G	L	L	Q	Y	L	M	F	G	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S				G	G	G														T	T								S	S	S												T	T							S		G	G	G