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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4pmyB_

Fold library idPDB HeaderMoleculeTitle
c4pmyB_PDB header: hydrolaseChain: B: PDB Molecule: xylanase;PDBTitle: structure of a novel bacterial xylanase complexed with xylose


Added to library: Sat Oct 11 08:26:42 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence APLAATASKFLGCAYGAQQAPGFAQYWNKLTPENGGKWGSVEAVRDQMDWSTLDAAYRFAQANQMPFQMH
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Known secondary structure (DSSP)

TTTT
SSSGGG
TT
S
SSTTS
SSTT



TT

B
 .........80.........90.........100.........110.........120.........130.........140
Sequence VMVWGNQQPEWIKTLRPAEQRREIEQWFAAVAQRYPDIALLEVVNEPLNDPPSKADTGGGNYLQALGGNG
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Known secondary structure (DSSP)
SB
SSS

GGGGGS

TT
S
TTT

S
B
STT
B

GGGGT
ST
 .........150.........160.........170.........180.........190.........200.........210
Sequence DSGWEWVLQSFRLARRHFPHTKLMINDYSITSSAQATQKYLQIVRLLQRENLVDAIGVQEHAFETTPEVA
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Known secondary structure (DSSP) TTS

TTS
SS
TT
TT





GGGS
TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VSVHRDNLDALAATGLPIYITEFDLDGPTDAQQLADYKRVFPVFWEHPAVHGITLWGFRPGLWRDKEAAY
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Known secondary structure (DSSP) TTS





SST
TTS
SSTTSTTTTTT

 .........290.........300...
Sequence LIRADGTERPALTWLRDYVAAHP
Predicted secondary structure









SS confidence






















Known secondary structure (DSSP) SB
TTS
B



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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