Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4pk1A_

Fold library idPDB HeaderMoleculeTitle
c4pk1A_PDB header: protein bindingChain: A: PDB Molecule: chimera protein of outer membrane protein assembly factorsPDBTitle: structure of bamb fused to a bama potra domain fragment


Added to library: Sat Dec 13 11:48:26 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EIQQINIVGNHAFTTDELISHFQLRDEQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVT
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)
S

SS
TT
S
S


TTT

S


TTS

 .........80.........90.........100.........110.........120.........130.........140
Sequence VNITEGDQYKLSGVEVSGNLAGHSAEIEQELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKT
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)





SS

S
TTTTT

B

TT

S

TTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VKLRVNVDAGNRMSPLPTVENQFTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDG
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP)













SS



TT

TTS






TT
TTS
TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KEIWSVSLAEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTS
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)







TTTTSTTT


SS
B
S

B

SS

BT
 .........290.........300.........310.........320.........330.........340.........350
Sequence NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISSDVD
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP) TT
TTT





S
SS



SSS

TTTTTTT




 .........360.........370.........380.........390.........400.........410.........420
Sequence TTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWT
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) SSSSSS

TTT



S


SS

B

TT
TTS
TTT

 .........430.........440.........450.........460.........470.........480.........490
Sequence QSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVY
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)
TTTTS
B


TTBTTS
TTT



TT
B
S

TTBSS

 ....
Sequence SITR
Predicted secondary structure
SS confidence



Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D