Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4pirD_

Fold library idPDB HeaderMoleculeTitle
c4pirD_PDB header: transport proteinChain: D: PDB Molecule: 5-hydroxytryptamine receptor 3a;PDBTitle: x-ray structure of the mouse serotonin 5-ht3 receptor


Added to library: Sat Aug 9 10:08:54 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TQPALLRLSDHLLANYKKGVRPVRDWRKPTTVSIDVIMYAILNVDEKNQVLTTYIWYRQYWTDEFLQWTP
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)

STSS

TTS
S
SSTTS
TTTT
TTS


S
 .........80.........90.........100.........110.........120.........130.........140
Sequence EDFDNVTKLSIPTDSIWVPDILINEFVDVGKSPNIPYVYVHHRGEVQNYKPLQLVTACSLDIYNFPFDVQ
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) TTTTS

GGGS



TTBSS







TT





SSSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence NCSLTFTSWLHTIQDINITLWRSPEEVRSDKSIFINQGEWELLEVFPQFKEFSIDISNSYAEMKFYVIIR
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) SS

TTTSS


SS


SSS
SSSS

 .........220.........230.........240.........250.........260.........270.........280
Sequence RRPLFYAVSLLLPSIFLMVVDIVGFCLPPDSGERVSFKITLLLGYSVFLIIVSDTLPATPLIGVYFVVCM
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP)
TTTS
TTTSTTSS




STT
 .........290.........300.........310.........320.........330.........340.........350
Sequence ALLVISLAETIFIVRLVHKQDLQRPVPDWLRHLVLDRIAWILCVRGLLQELSSIRHFLEKRDEMREVARD
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) S


S




TT


TT
 .........360.........370.........380....
Sequence WLRVGYVLDRLLFRIYLLAVLAYSITLVTLWSIW
Predicted secondary structure

SS confidence

































Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D