PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4phtY_

Fold library id	PDB Header	Molecule	Title
c4phtY_	PDB header: protein transport	Chain: Y: PDB Molecule: type ii secretion system protein l;	PDBTitle: atpase gspe in complex with the cytoplasmic domain of gspl from the2 vibrio vulnificus type ii secretion system

Links to external resources
Added to library: Sat Nov 29 08:16:00 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S E F L T V R L S S E Q Y S P I P W L V W S S S Q Q E V I A S G E L S D W Q Q L D D L K N Y A E Q R P I V V L V A A S D V V L T E V D I P P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
T T T T S S G G G G G G G G T T
T T
G G G S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G A S R Q F E S M L P Y L L E D E I A Q D V D D L H F S V L A K E N G K A Q V C G V D R R W L Q H M L D A F R A Q G L D V K R V L P D S L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T T G G G T T T T S S S
G G G
S S T T T
S G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L P L D D E G I S A A Q L G E Q W L F R H S A C Q G S A V D D S W M P V Y L N P L S V A C F S S L P E Q Q A H W L S R P V E M T M A L L S Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S
S S
S S S
S T T
S S
S

. . . . . . . . . 220 . . . . . .

Sequence G V A D G K F S L L T G E F K P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	E	F	L	T	V	R	L	S	S	E	Q	Y	S	P	I	P	W	L	V	W	S	S	S	Q	Q	E	V	I	A	S	G	E	L	S	D	W	Q	Q	L	D	D	L	K	N	Y	A	E	Q	R	P	I	V	V	L	V	A	A	S	D	V	V	L	T	E	V	D	I	P	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S		T	T	S									T	T	T	T									S	S	G	G	G	G	G	G	G	G	T	T		T	T									G	G	G	S									T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	A	S	R	Q	F	E	S	M	L	P	Y	L	L	E	D	E	I	A	Q	D	V	D	D	L	H	F	S	V	L	A	K	E	N	G	K	A	Q	V	C	G	V	D	R	R	W	L	Q	H	M	L	D	A	F	R	A	Q	G	L	D	V	K	R	V	L	P	D	S	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		S	T	T	T	G	G	G					T	T	T	T	S	S	S		G	G	G										S	S																					T	T	T									S	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	P	L	D	D	E	G	I	S	A	A	Q	L	G	E	Q	W	L	F	R	H	S	A	C	Q	G	S	A	V	D	D	S	W	M	P	V	Y	L	N	P	L	S	V	A	C	F	S	S	L	P	E	Q	Q	A	H	W	L	S	R	P	V	E	M	T	M	A	L	L	S	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				S	S	S							S	S							S	S	S							S	T	T													S	S				S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	G	V	A	D	G	K	F	S	L	L	T	G	E	F	K	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S			G	G	G