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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4pf6A_

Fold library idPDB HeaderMoleculeTitle
c4pf6A_PDB header: transport proteinChain: A: PDB Molecule: c4-dicarboxylate-binding protein;PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 roseobacter denitrificans (rd1_0742, target efi-510239) with bound 3-3 deoxy-d-manno-oct-2-ulosonic acid (kdo)


Added to library: Sat May 17 08:22:06 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DKITLRXSTPASETDQRSVALAEVFAPAVAGFATYQPHYNASLIAQNSELEAIASGDLEXSIASAQELAQ
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Known secondary structure (DSSP)


SS
TTSTTTT
TTSSS
TT
TS
S
T
 .........80.........90.........100.........110.........120.........130.........140
Sequence FFPEFSIFATGYVHQSAEHQVAVFNDPLXDPFKKTVEDELGIKLLSVXYLGQRHVNLRQTKEELTVTTPA
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Known secondary structure (DSSP) T
GGGGGGG
TT


SSGGGSSS
TTT


SSGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence DLAGVNLRXPGTDAWQFLGKALGANPTPXAFTEIYTALQTGSVDGQDNPLPTVVDAKFYEVTNQVALTGH
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Known secondary structure (DSSP) GGTT

SSTTS

GGGTSSS


TTGGGS

 .........220.........230.........240.........250.........260.........270.........280
Sequence LVDLNYIAFSKAVWDGLSPEQQEIVQTAADAAAQSGREKQLAKEQELVSFLEEQGXEIYAPDLDAFRTHV
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Known secondary structure (DSSP) S
TT



 .........290.........300.....
Sequence QEQYVGSEFAASWPEGVLDKINALG
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Known secondary structure (DSSP) TTSS
TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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