PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4pevB_

Fold library id	PDB Header	Molecule	Title
c4pevB_	PDB header: solute-binding protein	Chain: B: PDB Molecule: membrane lipoprotein family protein;	PDBTitle: crystal structure of abc transporter system solute-binding proteins2 from aeropyrum pernix k1

Links to external resources
Added to library: Sat May 24 08:25:46 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P I S V L V L F D V G G R G D L S F N D X A A L G A D R A A E E L G V D V V F Q T P Q S L A V X E S V L D A A S R S G E Y D L I V L V G F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S S
S S G G G T
S S G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence W Q E P L E K V A P R Y P E Q K Y A L I D A A T R E R Y D N V A S Y L F R E Q E V A S L V G I I A A D I A N N I S K A T G E E A K A G A V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G S T T
T T S
S
S S
T T
T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G X D I P P L W R F H I G Y L Y G V Q Y Y N Q A X G T D V E X V W T Y T G R F D D P T L G K T T A E Q X L Q Q G V R V F Y G V A G L T H V G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T
S
S S
T T S G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence X F N A V K E A A A R G V I A F S I G Q D A S Q E W Y D P Q T I I I S G L K R V D V A V Y T A I K D V V E G R F R G G I V S L G L K E G G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
G G G
T T T
T T
S T T T T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence G L S D E E I I R Y F A E I A A E T G Q L P E G L T P E K V V E I V X S Q R E K W I S N D G W R L V E E L K Q K I I S G E I K F V T P Q D H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
S S
T S S
B
S S

. . . . . . . . . 360 . . . . . . . . . 370

Sequence D T Y D S I I E E L K A G N L E A A L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G G B

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	I	S	V	L	V	L	F	D	V	G	G	R	G	D	L	S	F	N	D	X	A	A	L	G	A	D	R	A	A	E	E	L	G	V	D	V	V	F	Q	T	P	Q	S	L	A	V	X	E	S	V	L	D	A	A	S	R	S	G	E	Y	D	L	I	V	L	V	G	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S			S			S	S																										S	S	G	G	G												T			S						S	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	W	Q	E	P	L	E	K	V	A	P	R	Y	P	E	Q	K	Y	A	L	I	D	A	A	T	R	E	R	Y	D	N	V	A	S	Y	L	F	R	E	Q	E	V	A	S	L	V	G	I	I	A	A	D	I	A	N	N	I	S	K	A	T	G	E	E	A	K	A	G	A	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G								S	T	T		T	T	S						S				S	S			T	T								T																								S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	X	D	I	P	P	L	W	R	F	H	I	G	Y	L	Y	G	V	Q	Y	Y	N	Q	A	X	G	T	D	V	E	X	V	W	T	Y	T	G	R	F	D	D	P	T	L	G	K	T	T	A	E	Q	X	L	Q	Q	G	V	R	V	F	Y	G	V	A	G	L	T	H	V	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S																								T											S		S	S															T	T								S	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	X	F	N	A	V	K	E	A	A	A	R	G	V	I	A	F	S	I	G	Q	D	A	S	Q	E	W	Y	D	P	Q	T	I	I	I	S	G	L	K	R	V	D	V	A	V	Y	T	A	I	K	D	V	V	E	G	R	F	R	G	G	I	V	S	L	G	L	K	E	G	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T										S			G	G	G		T	T	T																						T	T										S	T	T	T	T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	G	L	S	D	E	E	I	I	R	Y	F	A	E	I	A	A	E	T	G	Q	L	P	E	G	L	T	P	E	K	V	V	E	I	V	X	S	Q	R	E	K	W	I	S	N	D	G	W	R	L	V	E	E	L	K	Q	K	I	I	S	G	E	I	K	F	V	T	P	Q	D	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T		S		S	S																																			T	S	S			B				S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Sequence	D	T	Y	D	S	I	I	E	E	L	K	A	G	N	L	E	A	A	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T		G	G	G	G	B