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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4pddA_

Fold library idPDB HeaderMoleculeTitle
c4pddA_PDB header: solute-binding proteinChain: A: PDB Molecule: trap dicarboxylate transporter, dctp subunit;PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 polaromonas sp js666 (bpro_0088, target efi-510167) bound to d-3 erythronate


Added to library: Sat May 17 08:25:04 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TILKIGYTPPKDSHYGVGATTFCDEVEKGTQERYKCQHFPSSALGGEREMIESVQLGTQDLVNTSTGPLG
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Known secondary structure (DSSP)

SS
SSSTTTS

TTTT

TSS
STTGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence NFVPETRIVDIPFLFRDYEHARKVMDGAIGQDLLKKMQAKGLIGLAWTENGFRHMTNSKRPILQASDAAG
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Known secondary structure (DSSP) GT
GGGGGGGSTT


SSTTSS



STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LKVRTMENKVHMDGYKTFGLLPTPMAFPELFTALQQGTVDGQENPIPVILSSKFSQVQKHLSLTGHVYSP
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Known secondary structure (DSSP)

S
TTT


GGGTSSS
TTGGGT

 .........220.........230.........240.........250.........260.........270.........280
Sequence AVLILSSRVWDKLSEADKKVFVAAAQKATVAQRKRVNDDEANGITQLKKDGMQVVEKVDGESFRKAVAPA
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Known secondary structure (DSSP) TTS
TT




GGG
 .........290.........300..
Sequence YAGFAKEFGAERIAAIQAVKAE
Predicted secondary structure


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Known secondary structure (DSSP)
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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