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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4pcgD_

Fold library idPDB HeaderMoleculeTitle
c4pcgD_PDB header: viral proteinChain: D: PDB Molecule: vp1;PDBTitle: structure of human polyomavirus 6 (hpyv6) vp1 pentamer


Added to library: Sat Aug 9 08:21:41 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VEVMETVPLSEDTIYKVEAILLPNFASGSNTAVYQSRGAPYTFTDTLDAGSSLCYTLAVVNLPEIPTLLV
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Known secondary structure (DSSP)





TTS


B

SBTTB

B
SB
S



SS
TTTS
B






 .........80.........90.........100.........110.........120.........130.........140
Sequence WEAFRVETELIFTPQLGSAGYIRAQGTPAGVEGSQMYFWACGGSPLDVIGINPDPERMNVAAGLEGPSKE
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Known secondary structure (DSSP)



SGGG
GGGT


BS
SS



SSTTT

TTS




S
 .........150.........160.........170.........180.........190.........200.........210
Sequence NQPSVAGIKATRKQVTAANFPIEIWSADPTRNENCRYFGRIVGGSVTPPVVSFGNQSTTPLVDENGVGIL
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Known secondary structure (DSSP)


SSSSTTS

SS

BTTT
TTS
TT
SSS







SS




TTS

 .........220.........230.........240.........250.........260...
Sequence CLFGAIYLTSADMLGMVGYAGNPTLSDAYSQQRSVQAAFGRFFRVHFRQRRVK
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Known secondary structure (DSSP)
TTS

TTSB
SSGGGGGG

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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