PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4pcdA_

Fold library id	PDB Header	Molecule	Title
c4pcdA_	PDB header: solute-binding protein	Chain: A: PDB Molecule: c4-dicarboxylate transport system, substrate-binding	PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 roseobacter denitrificans och 114 (rd1_1052, target efi-510238) with3 bound l-galactonate

Links to external resources
Added to library: Sat May 10 08:19:39 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S X Q E X T L K L G H L A N E Q N A W H L A A V K F G E E L S T L T D G R I A V E V F P N E S L G K E I D L I N G X Q L G T V D X T I T G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S T T T S
T T
S
T S
G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S L Q N W A P X A A L L A V P Y A Y K S L E H X D E V A S G E I G E Q I K Q Q I I E K A Q V R P I A F F A R G P R N L T S Q R P I T S P A D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G T
G G G G G G G
T T T
S S
S S
S G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L D G X K X R V P N V P L F V D V W S A L G A S P T P X A F S E V F T S L Q N G V I D G Q E N P L A L I R S A N F N E V Q G Y V N Q T E H V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S
T
G G G T T S
S B T T G G G T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R S W I Y L T I A E S T W A K L S E D D Q N A V X Q A A A T A Q E Y E R G L L L E S L A E D R G Y L E S K G X T F V E V D G A A F Q A A A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T

. . . . . . . . . 290 . . . . . . . . . 300

Sequence D A V L A N V S E E I R P I V E S L F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	X	Q	E	X	T	L	K	L	G	H	L	A	N	E	Q	N	A	W	H	L	A	A	V	K	F	G	E	E	L	S	T	L	T	D	G	R	I	A	V	E	V	F	P	N	E	S	L	G	K	E	I	D	L	I	N	G	X	Q	L	G	T	V	D	X	T	I	T	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S		T	T	S																	T	T	T	S								T	T		S													T	S								G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	L	Q	N	W	A	P	X	A	A	L	L	A	V	P	Y	A	Y	K	S	L	E	H	X	D	E	V	A	S	G	E	I	G	E	Q	I	K	Q	Q	I	I	E	K	A	Q	V	R	P	I	A	F	F	A	R	G	P	R	N	L	T	S	Q	R	P	I	T	S	P	A	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	G	T		G	G	G	G	G	G	G		T	T	T			S										S																																S	S				S	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	D	G	X	K	X	R	V	P	N	V	P	L	F	V	D	V	W	S	A	L	G	A	S	P	T	P	X	A	F	S	E	V	F	T	S	L	Q	N	G	V	I	D	G	Q	E	N	P	L	A	L	I	R	S	A	N	F	N	E	V	Q	G	Y	V	N	Q	T	E	H	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T							S												T								G	G	G							T	T	S		S	B											T	T	G	G	G	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	S	W	I	Y	L	T	I	A	E	S	T	W	A	K	L	S	E	D	D	Q	N	A	V	X	Q	A	A	A	T	A	Q	E	Y	E	R	G	L	L	L	E	S	L	A	E	D	R	G	Y	L	E	S	K	G	X	T	F	V	E	V	D	G	A	A	F	Q	A	A	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S																																					T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence	D	A	V	L	A	N	V	S	E	E	I	R	P	I	V	E	S	L	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S		T	T	T