PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4pc4B_

Fold library id	PDB Header	Molecule	Title
c4pc4B_	PDB header: lipid binding protein	Chain: B: PDB Molecule: 30k lipoprotein;	PDBTitle: bombyx mori lipoprotein 6

Links to external resources
Added to library: Sat Mar 7 08:17:19 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D T S N Q D L E E K L Y N S I L T G D Y D S A V R Q S L E Y E S Q G K G S I I Q N V V N N L I I D K R R N T M E Y C Y K L W V G N G Q E I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T T
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R K Y F P L N F R L I M A G N Y V K I I Y R N Y N L A L K L G S T T N P S N E R I A Y G D G V D K H T E L V S W K F I T L W E N N R V Y F K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T
T T T T
S
T T S
S S
S S S G G G
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I H N T K Y N Q Y L K M S T T T C N C N S R D R V V Y G G N S A D S T R E Q W F F Q P A K Y E N D V L F F I Y N R Q F N D A L E L G T I V N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S S S
S S T T
B S
S G G G
T T T T T
B
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . .

Sequence A S G D R K A V G H D G E V A G L P D I Y S W F I T P F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	T	S	N	Q	D	L	E	E	K	L	Y	N	S	I	L	T	G	D	Y	D	S	A	V	R	Q	S	L	E	Y	E	S	Q	G	K	G	S	I	I	Q	N	V	V	N	N	L	I	I	D	K	R	R	N	T	M	E	Y	C	Y	K	L	W	V	G	N	G	Q	E	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T															T	T		T													T	T		T												T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	K	Y	F	P	L	N	F	R	L	I	M	A	G	N	Y	V	K	I	I	Y	R	N	Y	N	L	A	L	K	L	G	S	T	T	N	P	S	N	E	R	I	A	Y	G	D	G	V	D	K	H	T	E	L	V	S	W	K	F	I	T	L	W	E	N	N	R	V	Y	F	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S										T								T	T	T	T							S				T	T	S								S	S		S	S	S	G	G	G										T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	H	N	T	K	Y	N	Q	Y	L	K	M	S	T	T	T	C	N	C	N	S	R	D	R	V	V	Y	G	G	N	S	A	D	S	T	R	E	Q	W	F	F	Q	P	A	K	Y	E	N	D	V	L	F	F	I	Y	N	R	Q	F	N	D	A	L	E	L	G	T	I	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T	T							S	S	S		S	S	T	T				B					S				S	G	G	G										T	T									T	T	T			B								S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Sequence	A	S	G	D	R	K	A	V	G	H	D	G	E	V	A	G	L	P	D	I	Y	S	W	F	I	T	P	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T										S			T	T