PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4pakA_

Fold library id	PDB Header	Molecule	Title
c4pakA_	PDB header: solute-binding protein	Chain: A: PDB Molecule: trap dicarboxylate transporter, dctp subunit;	PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a3 nephridial symbiont of the earthworm eisenia foetida, bound to (r)-4 pantoic acid

Links to external resources
Added to library: Sat May 10 08:26:55 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X A A Q T T X R I N I S T A Q N S H Q G V A I D T F A K E V E K R T G G R Y K V Q T F Y N A A L G A E R E S V E A V Q L G T H E L T F S S S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S S T T T S
T T T T
T S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G P I P N F V P E T K I L D V P F L F R D K A H A R A V L D G P I G Q E L L T R F D G K G F K A L A W A E N G F R H X S N S K R A V K E P G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T G G G T
G G G G G G G S T T
S S S T T G G G T S S
S G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D L K G L K X R T X E N P V H I A A Y K G F G I V T T P X A F S E V F T A L Q Q G T V D G Q E N P L S V I I S A K F D Q V Q K H L T L T G H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G T T
S
T T
G G G T S S S
T T G G G T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V Y S P A L F L X N K A L F D K L P A A D Q Q A F I D A A R Q G A K L N R A R V D E D D A K G V A D L R A K G X T V I D N I D K A R F V A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . .

Sequence L A P V N A Q F E K Q F G K A A L E Q I R S A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	A	A	Q	T	T	X	R	I	N	I	S	T	A	Q	N	S	H	Q	G	V	A	I	D	T	F	A	K	E	V	E	K	R	T	G	G	R	Y	K	V	Q	T	F	Y	N	A	A	L	G	A	E	R	E	S	V	E	A	V	Q	L	G	T	H	E	L	T	F	S	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S		S	S	S																	T	T	T	S								T	T	T	T													T	S	S	S						S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	P	I	P	N	F	V	P	E	T	K	I	L	D	V	P	F	L	F	R	D	K	A	H	A	R	A	V	L	D	G	P	I	G	Q	E	L	L	T	R	F	D	G	K	G	F	K	A	L	A	W	A	E	N	G	F	R	H	X	S	N	S	K	R	A	V	K	E	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	G	G	G	T		G	G	G	G	G	G	G	S	T	T			S	S										S									T	T	G	G	G	T																	S	S					S	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	L	K	G	L	K	X	R	T	X	E	N	P	V	H	I	A	A	Y	K	G	F	G	I	V	T	T	P	X	A	F	S	E	V	F	T	A	L	Q	Q	G	T	V	D	G	Q	E	N	P	L	S	V	I	I	S	A	K	F	D	Q	V	Q	K	H	L	T	L	T	G	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	T	T							S											T	T								G	G	G								T	S	S	S												T	T	G	G	G	T		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	Y	S	P	A	L	F	L	X	N	K	A	L	F	D	K	L	P	A	A	D	Q	Q	A	F	I	D	A	A	R	Q	G	A	K	L	N	R	A	R	V	D	E	D	D	A	K	G	V	A	D	L	R	A	K	G	X	T	V	I	D	N	I	D	K	A	R	F	V	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S																																					T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Sequence	L	A	P	V	N	A	Q	F	E	K	Q	F	G	K	A	A	L	E	Q	I	R	S	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																					T