PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4p9fA_

Fold library id	PDB Header	Molecule	Title
c4p9fA_	PDB header: transcription	Chain: A: PDB Molecule: hth-type transcriptional regulator mcbr;	PDBTitle: e. coli mcbr/yncc

Links to external resources
Added to library: Sat Jan 17 09:11:29 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X V S L T L Q V E N D L K H Q L S I G A L K P G A R L I T K N L A E Q L G X S I T P V R E A L L R L V S V N A L S V A P A Q A F T V P E V G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T
T
T T S S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K R Q L D E I N R I R Y E L E L X A V A L A V E N L T P Q D L A E L Q E L L E K L Q Q A Q E K G D X E Q I I N V N R L F R L A I Y H R S N X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P I L C E X I E Q L W V R X G P G L H Y L Y E A I N P A E L R E H I E N Y H L L L A A L K A K D K E G C R H C L A E I X Q Q N I A I L Y Q Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G
G G G G G G G G T T
G G

. .

Sequence Y N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	V	S	L	T	L	Q	V	E	N	D	L	K	H	Q	L	S	I	G	A	L	K	P	G	A	R	L	I	T	K	N	L	A	E	Q	L	G	X	S	I	T	P	V	R	E	A	L	L	R	L	V	S	V	N	A	L	S	V	A	P	A	Q	A	F	T	V	P	E	V	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T		S		T	T													T																T	T	S	S				T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	R	Q	L	D	E	I	N	R	I	R	Y	E	L	E	L	X	A	V	A	L	A	V	E	N	L	T	P	Q	D	L	A	E	L	Q	E	L	L	E	K	L	Q	Q	A	Q	E	K	G	D	X	E	Q	I	I	N	V	N	R	L	F	R	L	A	I	Y	H	R	S	N	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								T	T																							T																			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	I	L	C	E	X	I	E	Q	L	W	V	R	X	G	P	G	L	H	Y	L	Y	E	A	I	N	P	A	E	L	R	E	H	I	E	N	Y	H	L	L	L	A	A	L	K	A	K	D	K	E	G	C	R	H	C	L	A	E	I	X	Q	Q	N	I	A	I	L	Y	Q	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															G	G	G	G									G	G	G	G	G	G	G	G												T	T																						G	G
	.	.
Sequence	Y	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G