PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4p7nA_

Fold library id	PDB Header	Molecule	Title
c4p7nA_	PDB header: hydrolase	Chain: A: PDB Molecule: poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylase;	PDBTitle: structure of escherichia coli pgab c-terminal domain in complex with2 glucosamine

Links to external resources
Added to library: Sat Jul 5 08:23:25 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G S H M E K S P Q R I M H I D L D Y V Y D E N L Q Q M D R N I D V L I Q R V K D M Q I S T V Y L Q A F A D P D G D G L V K E V W F P N R L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T
S S
S
B
S S
S S
B
B S S
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P M K A D I F S R V A W Q L R T R S G V N I Y A W M P V L S W D L D P T L T R V K Y L P T G E K K A Q I H P E Q Y H R L S P F D D R V R A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S
S
T S
S S
B
T T S
B
B
T T
S S
B
T T S
B
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V G M L Y E D L A G H A A F D G I L F H D D A L L S D Y E D A S A P A I T A Y Q Q A G F S G S L S E I R Q N P E Q F K Q W A R F K S R A L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T
S T T
S
T
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence D F T L E L S A R V K A I R G P H I K T A R N I F A L P V I Q P E S E A W F A Q N Y A D F L K S Y D W T A I M A M P Y L E G V A E K S A D Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S G G G
S
T T T T T
G G G

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence W L I Q L T N Q I K N I P Q A K D K S I L E L Q A Q N W Q K N G Q H Q A I S S Q Q L A H W M S L L Q L N G V K N Y G Y Y P D N F L H N Q P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T S G G G S
T T S
T T
B G G G T B S

. . . . . . . . . 360 . . . .

Sequence I D L I R P E F S T A W Y P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	S	H	M	E	K	S	P	Q	R	I	M	H	I	D	L	D	Y	V	Y	D	E	N	L	Q	Q	M	D	R	N	I	D	V	L	I	Q	R	V	K	D	M	Q	I	S	T	V	Y	L	Q	A	F	A	D	P	D	G	D	G	L	V	K	E	V	W	F	P	N	R	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S									T	T	T			S	S																					S							B			S	S		S	S		B			B	S	S			S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	M	K	A	D	I	F	S	R	V	A	W	Q	L	R	T	R	S	G	V	N	I	Y	A	W	M	P	V	L	S	W	D	L	D	P	T	L	T	R	V	K	Y	L	P	T	G	E	K	K	A	Q	I	H	P	E	Q	Y	H	R	L	S	P	F	D	D	R	V	R	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B	S		S												T	S										S	S		B				T	T	S		B			B			T	T		S	S		B			T	T	S				B		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	G	M	L	Y	E	D	L	A	G	H	A	A	F	D	G	I	L	F	H	D	D	A	L	L	S	D	Y	E	D	A	S	A	P	A	I	T	A	Y	Q	Q	A	G	F	S	G	S	L	S	E	I	R	Q	N	P	E	Q	F	K	Q	W	A	R	F	K	S	R	A	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S						T	T					T	T				S										T	T			S							T		T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	D	F	T	L	E	L	S	A	R	V	K	A	I	R	G	P	H	I	K	T	A	R	N	I	F	A	L	P	V	I	Q	P	E	S	E	A	W	F	A	Q	N	Y	A	D	F	L	K	S	Y	D	W	T	A	I	M	A	M	P	Y	L	E	G	V	A	E	K	S	A	D	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T														S	G	G	G																S								T	T	T	T	T			G	G	G
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	W	L	I	Q	L	T	N	Q	I	K	N	I	P	Q	A	K	D	K	S	I	L	E	L	Q	A	Q	N	W	Q	K	N	G	Q	H	Q	A	I	S	S	Q	Q	L	A	H	W	M	S	L	L	Q	L	N	G	V	K	N	Y	G	Y	Y	P	D	N	F	L	H	N	Q	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	S	T	T	S	G	G	G							S					T	T	S																				T	T										B	G	G	G	T	B	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Sequence	I	D	L	I	R	P	E	F	S	T	A	W	Y	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T