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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4p6vF_

Fold library idPDB HeaderMoleculeTitle
c4p6vF_PDB header: oxidoreductaseChain: F: PDB Molecule: na(+)-translocating nadh-quinone reductase subunit f;PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae


Added to library: Sat Dec 6 08:36:03 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence STIIFGVVMFTLIILALVLVILFAKSKLVPTGDITISINGDPEKAIVTQPGGKLLTALAGAGVFVSSACG
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Known secondary structure (DSSP)
TTTSS




SSSS

S
S
SB






SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GGGSCGQCRVKIKSGGGDILPTELDHISKGEAREGERLACQVAVKADMDLELPEEIFGVKKWECTVISND
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Known secondary structure (DSSP) SSS
S







SS




TSSS

TT



TTTSBS
S

B


SS





 .........150.........160.........170.........180.........190.........200.........210
Sequence NKATFIKELKLAIPDGESVPFRAGGYIQIEAPAHHVKYADFDVPEKYRGDWDKFNLFRYESKVDEPIIRA
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Known secondary structure (DSSP) TT
GGG





TT

SGGGS


TTGGG

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence YSMANYPEEFGIIMLNVRIATPPPNNPNVPPGQMSSYIWSLKAGDKCTISGPFGEFFAKDTDAEMVFIGG
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Known secondary structure (DSSP)

S
TTSTT




TT
TTS




TT






SS


 .........290.........300.........310.........320.........330.........340.........350
Sequence GAGMAPMRSHIFDQLKRLKSKRKMSYWYGARSKREMFYVEDFDGLAAENDNFVWHCALSDPQPEDNWTGY
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Known secondary structure (DSSP) GGGTS


S
SSGGG

S
TTSS

GGG


S
 .........360.........370.........380.........390.........400.......
Sequence TGFIHNVLYENYLKDHEAPEDCEYYMCGPPMMNAAVINMLKNLGVEEENILLDDFGG
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Known secondary structure (DSSP) S
TTTT
S
GGGS

T

GGG





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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