PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4p6vD_

Fold library id	PDB Header	Molecule	Title
c4p6vD_	PDB header: oxidoreductase	Chain: D: PDB Molecule: na(+)-translocating nadh-quinone reductase subunit d;	PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae

Links to external resources
Added to library: Sat Dec 6 08:19:09 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L K K S V L A P V L D N N P I A L Q V L G V C S A L A V T T K L E T A F V M T L A V M F V T A L S N F F V S L I R N V R I I V Q M A I I A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
T T T T T
T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L V I V V D Q I L K D I S K Q L S V F V G L I I T N C I V M G R A E A F A P I P S F I D G I G N G L G Y G F V L M T V G F F R E L L G S G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T S
T
T T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . .

Sequence L F G L E V L P N G L M L L A P S A F F L I G F M I W A I R T F K P E Q V E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
S T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	K	K	S	V	L	A	P	V	L	D	N	N	P	I	A	L	Q	V	L	G	V	C	S	A	L	A	V	T	T	K	L	E	T	A	F	V	M	T	L	A	V	M	F	V	T	A	L	S	N	F	F	V	S	L	I	R	N	V	R	I	I	V	Q	M	A	I	I	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	S		T	T	T	T	T										T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	V	I	V	V	D	Q	I	L	K	D	I	S	K	Q	L	S	V	F	V	G	L	I	I	T	N	C	I	V	M	G	R	A	E	A	F	A	P	I	P	S	F	I	D	G	I	G	N	G	L	G	Y	G	F	V	L	M	T	V	G	F	F	R	E	L	L	G	S	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T			T													S										T					T																											T	S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Sequence	L	F	G	L	E	V	L	P	N	G	L	M	L	L	A	P	S	A	F	F	L	I	G	F	M	I	W	A	I	R	T	F	K	P	E	Q	V	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S			S									S																	T	T	S