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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4p6vA_

Fold library idPDB HeaderMoleculeTitle
c4p6vA_PDB header: oxidoreductaseChain: A: PDB Molecule: na(+)-translocating nadh-quinone reductase subunit a;PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae


Added to library: Sat Dec 6 08:20:48 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MITIKKGLDLPIAGTPSQVISDGKAIKKVALLGEEYVGMRPTMHVRVGDEVKKAQILFEDKKNPGVKFTS
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Known secondary structure (DSSP)









S



S


GGGSTT

S

TT

BT
TTSTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence PVSGKVVEINRGAKRVLQSVVIEVAGDDQVTFDKFEANQLASLNRDAIKTQLVESGLWTAFRTRPFSKVP
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Known secondary structure (DSSP) SSS
GGG

S

B
B




TTS
SGGGG
TTT



 .........150.........160.........170.........180.........190.........200.........210
Sequence AIDSTSEAIFVTAMDTNPLAAEPTVVINEQSEAFVAGLDVLSALTTGKVYVCKKGTSLPRSQQPNVEEHV
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Known secondary structure (DSSP)
TT


S



STT


T
SS
SS




S
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence FDGPHPAGLAGTHMHFLYPVSADHVAWSINYQDVIAVGQLFLTGELYTQRVVSLAGPVVNKPRLVRTVMG
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Known secondary structure (DSSP) SSSSSS
S


SSS

SB


STTBSS
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence ASLEQLVDSEIMPGEVRIISGSVLSGTKATGPHAYLGRYHLQVSVLREGPIGNYEKVMPLDMEPTLLLRD
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Known secondary structure (DSSP) BBTTTTB
SS
TT

GGG
B

TT





S

STT

SSS

 .........360.........370.........380.........390.........400
Sequence LCAGDSDSAVRLGALELDEEDLALCTFVCPGKYEYGQLLRECLDKIEKEG
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Known secondary structure (DSSP) SS
ST
TT

TTS
TT





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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