PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4p47A_

Fold library id	PDB Header	Molecule	Title
c4p47A_	PDB header: solute-binding protein	Chain: A: PDB Molecule: trap dicarboxylate transporter, dctp subunit;	PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 ochrobactrum anthropi (oant_4429), target efi-510151, c-termius bound3 in ligand binding pocket

Links to external resources
Added to library: Sat Apr 26 08:23:29 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E I R S Q T I K F A A A N S K G H P Q V T G M E K F A E L V K E K S G G Q I N V K L F P G G V L G S D P Q T L S G L Q G G V V E M T V M N A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S T T T S
T T T T
T S S
G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G I L S S T V K A F E A V D L P F L F N S G E E A D K V M D G P F G T N L M K R L P D T G L I G L A Y W E L G F R N L T N N R H P V A K L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G G T S G G G G G G G S T T
S S S T T S G G G T S S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D I A G L K I R T L Q S P V P V A L F N A L G A N A V P L P Y T E L Y T A L E T G T V D G Q E N P N A N I I N A K F Y E V Q K Y L T L T R H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T
T S S
T T T G G G T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Q Y N P Q I V M I S K K F W D R L N D E E K A V I E Q A A V E A R D Y Q R K V S R E Q D A T A L D E I K K T G M Q V T E L T P E E T T R L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320

Sequence D A V K P I I D K F T A E I G A E T V D E L F A E L K K V R G E N A E N L Y F Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S
G G G G S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	I	R	S	Q	T	I	K	F	A	A	A	N	S	K	G	H	P	Q	V	T	G	M	E	K	F	A	E	L	V	K	E	K	S	G	G	Q	I	N	V	K	L	F	P	G	G	V	L	G	S	D	P	Q	T	L	S	G	L	Q	G	G	V	V	E	M	T	V	M	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S		T	T	S																	T	T	T	S								T	T	T	T													T	S	S							G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	I	L	S	S	T	V	K	A	F	E	A	V	D	L	P	F	L	F	N	S	G	E	E	A	D	K	V	M	D	G	P	F	G	T	N	L	M	K	R	L	P	D	T	G	L	I	G	L	A	Y	W	E	L	G	F	R	N	L	T	N	N	R	H	P	V	A	K	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	G	G	T	S	G	G	G	G	G	G	G	S	T	T			S	S										S								T	T	S	G	G	G	T																	S	S	S				S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	I	A	G	L	K	I	R	T	L	Q	S	P	V	P	V	A	L	F	N	A	L	G	A	N	A	V	P	L	P	Y	T	E	L	Y	T	A	L	E	T	G	T	V	D	G	Q	E	N	P	N	A	N	I	I	N	A	K	F	Y	E	V	Q	K	Y	L	T	L	T	R	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T								S										T	T																		T	S	S							T						T	T	G	G	G	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Q	Y	N	P	Q	I	V	M	I	S	K	K	F	W	D	R	L	N	D	E	E	K	A	V	I	E	Q	A	A	V	E	A	R	D	Y	Q	R	K	V	S	R	E	Q	D	A	T	A	L	D	E	I	K	K	T	G	M	Q	V	T	E	L	T	P	E	E	T	T	R	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	S																																					T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Sequence	D	A	V	K	P	I	I	D	K	F	T	A	E	I	G	A	E	T	V	D	E	L	F	A	E	L	K	K	V	R	G	E	N	A	E	N	L	Y	F	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								G	G	G																						S		G	G	G	G	S