PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4p31B_

Fold library id	PDB Header	Molecule	Title
c4p31B_	PDB header: hydrolase	Chain: B: PDB Molecule: lipopolysaccharide export system atp-binding protein lptb;	PDBTitle: crystal structure of a selenomethionine derivative of e. coli lptb in2 complex with adp-magensium

Links to external resources
Added to library: Sat Mar 29 10:10:47 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A T L T A K N L A K A Y K G R R V V E D V S L T V N S G E I V G L L G P N G A G K T T T F Y X V V G I V P R D A G N I I I D D D D I S L L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
T T S S T S S
S T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L H A R A R R G I G Y L P Q E A S I F R R L S V Y D N L X A V L Q I R D D L S A E Q R E D R A N E L X E E F H I E H L R D S X G Q S L S G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S
T T S B T T
T T S
T T
G G G T T
B G G G S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E R R R V E I A R A L A A N P K F I L L D E P F A G V D P I S V I D I K R I I E H L R D S G L G V L I T D H N V R E T L A V C E R A Y I V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S T T T T
T T
S
T T
S

. . . . . . . . . 220 . . . . . . . . . 230

Sequence Q G H L I A H G T P T E I L Q D E H V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	T	L	T	A	K	N	L	A	K	A	Y	K	G	R	R	V	V	E	D	V	S	L	T	V	N	S	G	E	I	V	G	L	L	G	P	N	G	A	G	K	T	T	T	F	Y	X	V	V	G	I	V	P	R	D	A	G	N	I	I	I	D	D	D	D	I	S	L	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T													T	T									T	T	S	S										T	S	S			S							T	T				T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	H	A	R	A	R	R	G	I	G	Y	L	P	Q	E	A	S	I	F	R	R	L	S	V	Y	D	N	L	X	A	V	L	Q	I	R	D	D	L	S	A	E	Q	R	E	D	R	A	N	E	L	X	E	E	F	H	I	E	H	L	R	D	S	X	G	Q	S	L	S	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T						S	S			S		T	T	S	B										T	T		T	T	S																T	T		G	G	G	T	T		B	G	G	G	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	R	R	R	V	E	I	A	R	A	L	A	A	N	P	K	F	I	L	L	D	E	P	F	A	G	V	D	P	I	S	V	I	D	I	K	R	I	I	E	H	L	R	D	S	G	L	G	V	L	I	T	D	H	N	V	R	E	T	L	A	V	C	E	R	A	Y	I	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T			S						S	T	T	T	T																			T	T								S							T	T		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	Q	G	H	L	I	A	H	G	T	P	T	E	I	L	Q	D	E	H	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T												T	T		S	S