Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4p1lA_

Fold library idPDB HeaderMoleculeTitle
c4p1lA_PDB header: transport proteinChain: A: PDB Molecule: trap dicarboxylate transporter, dctp subunit;PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 chromohalobacter salexigens dsm 3043 (csal_2479), target efi-510085,3 with bound d-glucuronate, spg i213


Added to library: Sat Mar 22 08:21:23 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SWRGWNIHPPSYPNGKALESFAKEVAEKTEGRVEPKVYHNAVLGDQPDAIEQTRSGALDFANFNXGPXGP
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)

SS
TTSTTTSS

TTTT

TTSS
STTTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence IVPAANVLSLPFIFKSPDDXYRIXDGEIGERFADALAEKNLIVLSWFGSGARSLYNTDHPVETPDDVEGL
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TSGGGGGGGSTT
SS
TSTT



SS



SGGGGTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence KVRVXNNDLYVQXIDEXGGNATPXAYGEVYQSLKTGVIDGAENNYPSYESSGHYEVANYYSLTEHLILPE
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)
S
TS

GGGTTS
S
TTGGGT




 .........220.........230.........240.........250.........260.........270.........280
Sequence CLCVAKASWEELSEKDRQAIREAAEDAAKEQRALWEEGVQASKQKILDAGVKINEVDDKSAFQAKXQPIY
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) S
TT


S
TT
 .........290.........300..
Sequence DQFVQEHPELESLVTDIQDAQS
Predicted secondary structure

SS confidence





















Known secondary structure (DSSP)
GGGTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D