PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4p1eA_

Fold library id	PDB Header	Molecule	Title
c4p1eA_	PDB header: transport protein	Chain: A: PDB Molecule: trap dicarboxylate transporter, dctp subunit;	PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 escherichia fergusonii (efer_1530), target efi-510119, apo open3 structure, phased with iodide

Links to external resources
Added to library: Sat Mar 22 08:21:12 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A E S L N V S T S L S P D D P I Y K G L Q S F K K G V E S R T N G E V K I K L F S Q L G A D N E L L Q H A Q A G S N V G V V V D G A R L A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S T T T S
T T
S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F V P E F A I I P A P F V F K D Y T T L K K F I S S P V F A Q W S E Q M S S K S G L T P L S F N W Y Q G A R M L V T Q K P V S K P S D L N G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S G G G G G T T S T T S
S S T S S
S S
S S G G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V R V R A L E A P V T I E T I K C M G G S P T P L S W S E I Y S S I Q T G V V D A A E A Q P T A V Y G S K L Y E I T K H I T K T N H I H L M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T
G G G T S
S B
T T G G G T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence T G I I V S Q K W L S S L T A E Q Q T I L R E E A Q K N G D I A S E N T I L A G D K M L D E M A K K G M T I S E V D T Q P F I D G C R Y V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T
T T

. . . . . . . . . 290 . . . . . .

Sequence E K L G L S E A Y K Q V N S I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	E	S	L	N	V	S	T	S	L	S	P	D	D	P	I	Y	K	G	L	Q	S	F	K	K	G	V	E	S	R	T	N	G	E	V	K	I	K	L	F	S	Q	L	G	A	D	N	E	L	L	Q	H	A	Q	A	G	S	N	V	G	V	V	V	D	G	A	R	L	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S		T	T	S																	T	T	T	S																					T	T		S											T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	V	P	E	F	A	I	I	P	A	P	F	V	F	K	D	Y	T	T	L	K	K	F	I	S	S	P	V	F	A	Q	W	S	E	Q	M	S	S	K	S	G	L	T	P	L	S	F	N	W	Y	Q	G	A	R	M	L	V	T	Q	K	P	V	S	K	P	S	D	L	N	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	G	G	G	G	G	T	T	S	T	T	S		S	S									T	S															S																		S	S			S	S	G	G	G	G	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	R	V	R	A	L	E	A	P	V	T	I	E	T	I	K	C	M	G	G	S	P	T	P	L	S	W	S	E	I	Y	S	S	I	Q	T	G	V	V	D	A	A	E	A	Q	P	T	A	V	Y	G	S	K	L	Y	E	I	T	K	H	I	T	K	T	N	H	I	H	L	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S											T								G	G	G								T	S		S	B											T	T	G	G	G	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	T	G	I	I	V	S	Q	K	W	L	S	S	L	T	A	E	Q	Q	T	I	L	R	E	E	A	Q	K	N	G	D	I	A	S	E	N	T	I	L	A	G	D	K	M	L	D	E	M	A	K	K	G	M	T	I	S	E	V	D	T	Q	P	F	I	D	G	C	R	Y	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S																																				T	T	T																T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Sequence	E	K	L	G	L	S	E	A	Y	K	Q	V	N	S	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T