PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4oy2D_

Fold library id	PDB Header	Molecule	Title
c4oy2D_	PDB header: transcription	Chain: D: PDB Molecule: transcription initiation factor tfiid subunit 7;	PDBTitle: crystal structure of taf1-taf7, a tfiid subcomplex

Links to external resources
Added to library: Sat Jun 28 08:12:26 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P I R I P G E A Y D S E A S D I E D D P L I E S G V I L R I L P D I Q L E F V K N S L E S G D Y S G I S I K W K N E R H A V V T I N D V X Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S S T T
S S
S S
S S T
T T T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G A I L V D L P T V I E V N K S V D R K N L L K T F D V S Q X L L C I R P I Q E E E E V Y A L E A P D T E D L V V K H F E G I E D E I W E N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
S S G G G G G G
T T
T T T T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K E T F L K G Y N G A P L S D X E A K H L K E I A L K G Y D Y K H G I S P P L Y N V R N R R F R R K X D P N E I D Y V E K V V D X L L K Q D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T T
S
S S G G G T T S S

. . . . . . . . . 220 . . . . .

Sequence K Q A E E V S Y D L V D K S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	I	R	I	P	G	E	A	Y	D	S	E	A	S	D	I	E	D	D	P	L	I	E	S	G	V	I	L	R	I	L	P	D	I	Q	L	E	F	V	K	N	S	L	E	S	G	D	Y	S	G	I	S	I	K	W	K	N	E	R	H	A	V	V	T	I	N	D	V	X	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T		S	S	T	T		S	S			S	S													S	S													T			T	T								T	T							S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	A	I	L	V	D	L	P	T	V	I	E	V	N	K	S	V	D	R	K	N	L	L	K	T	F	D	V	S	Q	X	L	L	C	I	R	P	I	Q	E	E	E	E	V	Y	A	L	E	A	P	D	T	E	D	L	V	V	K	H	F	E	G	I	E	D	E	I	W	E	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S	S	S	S																			S	S	G	G	G	G	G	G				T	T				T	T	T	T	T		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	E	T	F	L	K	G	Y	N	G	A	P	L	S	D	X	E	A	K	H	L	K	E	I	A	L	K	G	Y	D	Y	K	H	G	I	S	P	P	L	Y	N	V	R	N	R	R	F	R	R	K	X	D	P	N	E	I	D	Y	V	E	K	V	V	D	X	L	L	K	Q	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								G	G	G										T					T	T						S			S	S	G	G	G	T	T					S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Sequence	K	Q	A	E	E	V	S	Y	D	L	V	D	K	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	S	S									S