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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4oy2C_

Fold library idPDB HeaderMoleculeTitle
c4oy2C_PDB header: transcriptionChain: C: PDB Molecule: transcription initiation factor tfiid subunit 1;PDBTitle: crystal structure of taf1-taf7, a tfiid subcomplex


Added to library: Sat Jun 28 08:17:33 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NLNIQHSQPAINLQSPFYKVAVPRYQLRHFHRENFGSHIRPGTKIVFSKLKARKRKRDKGKDVKESFSTS
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Known secondary structure (DSSP)






TT
TTT

SS

TTS


SGGGS
TT











TT


SSG
 .........80.........90.........100.........110.........120.........130.........140
Sequence QDLTIGDTAPVYLXEYSEQTPVALSKFGXANKLINYYRKANEQDTLRPKLPVGETHVLGVQDKSPFWNFG
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Known secondary structure (DSSP) GGS
SSSSS

SSSS
S



TT



SSTT






SSS
TT


TTGGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence FVEPGHIVPTLYNNXIRAPVFKHDISGTDFLLTKSSGFGISNRFYLRNINHLFTVGQTFPVEEIPGPNSR
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Known secondary structure (DSSP)


BT

SS


TT



SS
SS





SS



TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KVTSXKATRLKXIIYRILNHNHSKAISIDPIAKHFPDQNRQKVKEFXKYQWRLKDDEKLLDNEAVKSLIT
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Known secondary structure (DSSP) T
SS


STTTGGGS



TTT



SS




GGGS
 .........290.........300.........310.........320.........330.........340.........350
Sequence PEQISQVESXSQGLQFQEDNEAYNFDSKLKSLEENLLPWNITKNFINSTQXRAXIQIHGVGDPTGCGEGF
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Known secondary structure (DSSP)


T
TTS
SSTT
SSSSSSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence SFLKTSXKGGFSYNVAQQQKAYDEEIAKTWYTHTKSLSISNPFEEXTNPDEINQTNKHVKTDRDDKKILK
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Known secondary structure (DSSP)








TT
S

S
TT


S


S
SS


 .........430.........440.........450.........460
Sequence IVRKKRDENGIIQRQTIFIRDPRVIQGYIKIKEQDKEDVN
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Known secondary structure (DSSP)
SSS






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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