PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4ovxA_

Fold library id	PDB Header	Molecule	Title
c4ovxA_	PDB header: isomerase	Chain: A: PDB Molecule: xylose isomerase domain protein tim barrel;	PDBTitle: crystal structure of xylose isomerase domain protein from planctomyces2 limnophilus dsm 3776

Links to external resources
Added to library: Sat Feb 15 08:19:34 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S P F E I S L A Q W S L H K A F F D K K A D P X D F A K I A K E E F G I N A I E Y V N Q F Y K G K A E D Q A F L A D L K K R A D D H G V K S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G T T S S
G G G
G G G G T T
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L L I X C D G E G A L G D A D E A K R K K A V E N H Y K W V A A A K Y L G C H S I R V N A Q S G G S Y D E Q L A R A A D G L R R L T E F A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T B
S S T T
S
B
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T H D I N V I V E N H G G L S S N G A W L A A V X K K V D H P R C G T L P D F G N F R V S K D E X Y D R Y K G V E E L X P F A K A V S A K S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S G G G G
T T
B S S
T T
G G G B S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270

Sequence H D F D A A G N E I H T D Y R K X X K I V A S F G Y K G Y V G I E Y E G S K I S E A D G I K A T K K L L E T V R S E X A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T S
B S S S
T T
S
S S S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	P	F	E	I	S	L	A	Q	W	S	L	H	K	A	F	F	D	K	K	A	D	P	X	D	F	A	K	I	A	K	E	E	F	G	I	N	A	I	E	Y	V	N	Q	F	Y	K	G	K	A	E	D	Q	A	F	L	A	D	L	K	K	R	A	D	D	H	G	V	K	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									G	G	G	G						T	T	S	S		G	G	G																		G	G	G	G	T	T		T	T															T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	L	I	X	C	D	G	E	G	A	L	G	D	A	D	E	A	K	R	K	K	A	V	E	N	H	Y	K	W	V	A	A	A	K	Y	L	G	C	H	S	I	R	V	N	A	Q	S	G	G	S	Y	D	E	Q	L	A	R	A	A	D	G	L	R	R	L	T	E	F	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S			T	B		S	S											T											T		S								B		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	H	D	I	N	V	I	V	E	N	H	G	G	L	S	S	N	G	A	W	L	A	A	V	X	K	K	V	D	H	P	R	C	G	T	L	P	D	F	G	N	F	R	V	S	K	D	E	X	Y	D	R	Y	K	G	V	E	E	L	X	P	F	A	K	A	V	S	A	K	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T									S	G	G	G	G															T	T						B	S	S						T	T													G	G	G	B	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Sequence	H	D	F	D	A	A	G	N	E	I	H	T	D	Y	R	K	X	X	K	I	V	A	S	F	G	Y	K	G	Y	V	G	I	E	Y	E	G	S	K	I	S	E	A	D	G	I	K	A	T	K	K	L	L	E	T	V	R	S	E	X	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B		T	T	S		B	S	S	S												T	T			S									S	S	S																			T