PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4ovrA_

Fold library id	PDB Header	Molecule	Title
c4ovrA_	PDB header: solute-binding protein	Chain: A: PDB Molecule: trap dicarboxylate transporter, dctp subunit;	PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 xanthobacter autotrophicus py2, target efi-510329, with bound beta-d-3 galacturonate

Links to external resources
Added to library: Sat Jan 25 08:20:53 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R Q Y R S A D V Q P A D Y P T V K A V Q S X S D E L N K E T N G K I S I K V F P N S Q L G S E K D T I E Q V K L G A L D F I R I N S G T L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S T T T S
T T T T
T S S S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T V C P A X T V P V L P F L F R D K A H X R A V L D G P I G D E I L A D C A S H G L V G L A F Y D S G A R S F Y A T T P I R K L E D L K G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G S T T
S S S S T T G G G T
S S
S G G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K I R V Q Q S D I W V S X X K L L G A N A T P X P A G E V F T G L K S G L I D G A E N N W P S Y D N F H H Y E A A K N Y S L S E H S X A P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
G G G T S
S
T
G G G T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V L L I S K R V F D S F T P E E Q V Q V R K A A K N S V G Y X R Q L W D A X E I S S R E K V E K A G V E V I T I D K A P F Q A A V Q P L Y D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T

. . . . . . . . . 290 . . . . . . . .

Sequence Q F V T D P K L K D X I T R I K A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	Q	Y	R	S	A	D	V	Q	P	A	D	Y	P	T	V	K	A	V	Q	S	X	S	D	E	L	N	K	E	T	N	G	K	I	S	I	K	V	F	P	N	S	Q	L	G	S	E	K	D	T	I	E	Q	V	K	L	G	A	L	D	F	I	R	I	N	S	G	T	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S		T	T	S																	T	T	T	S								T	T	T	T													T	S	S	S										T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	V	C	P	A	X	T	V	P	V	L	P	F	L	F	R	D	K	A	H	X	R	A	V	L	D	G	P	I	G	D	E	I	L	A	D	C	A	S	H	G	L	V	G	L	A	F	Y	D	S	G	A	R	S	F	Y	A	T	T	P	I	R	K	L	E	D	L	K	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		G	G	G					S	T	T		S	S	S										S									T	T	G	G	G	T																	S	S				S	G	G	G	G	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	I	R	V	Q	Q	S	D	I	W	V	S	X	X	K	L	L	G	A	N	A	T	P	X	P	A	G	E	V	F	T	G	L	K	S	G	L	I	D	G	A	E	N	N	W	P	S	Y	D	N	F	H	H	Y	E	A	A	K	N	Y	S	L	S	E	H	S	X	A	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S										T	T								G	G	G								T	S		S												T		G	G	G	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	L	L	I	S	K	R	V	F	D	S	F	T	P	E	E	Q	V	Q	V	R	K	A	A	K	N	S	V	G	Y	X	R	Q	L	W	D	A	X	E	I	S	S	R	E	K	V	E	K	A	G	V	E	V	I	T	I	D	K	A	P	F	Q	A	A	V	Q	P	L	Y	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S																																					T	T																T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Sequence	Q	F	V	T	D	P	K	L	K	D	X	I	T	R	I	K	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T