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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ovkA_

Fold library idPDB HeaderMoleculeTitle
c4ovkA_PDB header: solute-binding proteinChain: A: PDB Molecule: periplasmic binding protein;PDBTitle: crystal structure of periplasmic solute binding protein from2 veillonella parvula dsm 2008


Added to library: Sat Jan 11 09:27:42 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NIKVVTDLTGTDVSXKKEINRIAIVPIPWTSIVYAVDGSDKKIVGIHPSAKKSYEASIFKTLAPDLENVN
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Known secondary structure (DSSP)

TTS
SS



SSTTSSTT

TST
GGGGGSB
 .........80.........90.........100.........110.........120.........130.........140
Sequence SSFVDNNFNVNFEEVAKLKPDVVIIWDYQPEVAKKLKELGIPAVSIKYGTLEDIQNGIRLLGKILDKPEQ
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Known secondary structure (DSSP)

SB
TT

B


STT
TT



SST
 .........150.........160.........170.........180.........190.........200.........210
Sequence AEALISYHKDSEAYFKQKNASALPNKPKVLYLQNKNLTVAGNNSVNQLXITXTGGENAAKDTKGSWTKVS
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Known secondary structure (DSSP)
GGG
SS


SSSS
TTSTT
TTTT

SS

 .........220.........230.........240.........250.........260.........270.........280
Sequence XEEIXTWDPDIIILSNFDSIRPDDIYQDKLEGQNWSNIKAVKTHRVYKAPXGIYRWDAPNVETPLXXKWX
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Known secondary structure (DSSP)

S
SSS


TT
STT


TTSTT


BSSSBSSSS
TT
 .........290.........300.........310.........320.........
Sequence GQLIQPDTFNDYILRDDLKQFYNTFYHYNLTDSEINTILNISINNTPTF
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Known secondary structure (DSSP)
TTTS
S






TT
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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