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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ot9A_

Fold library idPDB HeaderMoleculeTitle
c4ot9A_PDB header: transcriptionChain: A: PDB Molecule: nuclear factor nf-kappa-b p100 subunit;PDBTitle: crystal structure of the c-terminal domain of p100/nf-kb2


Added to library: Sat Jan 17 09:05:42 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QAPEMLQRAREYNARLFGLAQRSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVI
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Known secondary structure (DSSP)

TT

TTGGGTT


TT


TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence EQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGA
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Known secondary structure (DSSP) TTT
TTGGG


TT


TT
S


TT


TTS

T

SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence PELLRALLQSGAPAVPQLLHMPDFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEM
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Known secondary structure (DSSP) SS
GGGTTTTT


TTT


TT
TS

TT


TTT


T
 .........220.........230.........240.........250.........260.........270.........280
Sequence EELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPSSFRGHTPLDLTC
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Known secondary structure (DSSP) T
TTT


SS


TTS

T
TT

S



S








TTTS

 .........290........
Sequence STKVKTLLLNAAQNTMEP
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Known secondary structure (DSSP)
SSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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