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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4oo1J_

Fold library idPDB HeaderMoleculeTitle
c4oo1J_PDB header: hydrolase/rnaChain: J: PDB Molecule: exosome complex exonuclease rrp6;PDBTitle: structure of the exosome component in complex with rna.


Added to library: Sat Jul 5 08:21:55 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MVEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEIL
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Known secondary structure (DSSP)



TTTTSSS






S








TT
SS
SS




SS

S



TTS


TTSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence QIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVNLEHHDYRSYYGIVCLMQISTRERDYLVDT
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Known secondary structure (DSSP) S








TTT


STTTTT
S
SSSSS

SS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFAN
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Known secondary structure (DSSP) SSSSTTGGGGT
TTSSSTTTTT



SST
S

STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence FKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYR
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Known secondary structure (DSSP)





SSSS


SSS

TTT
T


STT
 .........290.........300.........310.........320.........330.........340.........350
Sequence PLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTP
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Known secondary structure (DSSP)
SS

SS
S

SS
TTTT

TTTTTTT



T

 .........360.........370.........380.........390.........400.........410.........420
Sequence TDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKNTNSETKADGILLETISVPQIRDVMERFSVLCNS
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Known secondary structure (DSSP)
SSS
SS


STTT


TTS
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence NISKSRAKPVTNSSILLGKILPREEHDIAYSKDGLPNKVKTEDIRIRAQNFKSALANLEDIIFEIEKPLV
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Known secondary structure (DSSP) TTT










SSSTTTTT






SS




TTS









TT
 ...
Sequence VPV
Predicted secondary structure


SS confidence


Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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