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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4on1B_

Fold library idPDB HeaderMoleculeTitle
c4on1B_PDB header: hydrolaseChain: B: PDB Molecule: putative metalloprotease ii;PDBTitle: crystal structure of metalloproteinase-ii from bacteroides fragilis


Added to library: Sat Apr 12 08:22:18 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PQLEHVLNLRSMDYEDLAGVLSKISNTEHTIMLQEGSELWTTSIKAIHGVEIEESNRPVYLFEGQDKDSI
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Known secondary structure (DSSP)



TTT

TT
SSS
TT

STTSSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence NAILSQSYATIRLQRGGDLIDYIVYKDKERMAEIANYYQNHYDKIVVCNTGDIKNIRIDITKAIGNNPFK
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Known secondary structure (DSSP)
SSTTSS


S

T
TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GLPIKDYPTEATYPATLEFMLIKEKDGGSLEHDITSQIQAVTTSLKFLIDSGFITVKYTIKDSSHKGGAS
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Known secondary structure (DSSP) T
B


S




S

TT



TTTTS
S



SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence DYEVSALESFQNYLRSWDEVKGQDKKPYILLRDGTWDSGKTFGYASGIGVIHLNNPRGNFEVAAISTTSS
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Known secondary structure (DSSP)

T
GGGTT
TTS
SS
BTTTTBSS
SS


SSS


TT
S

T
 .........290.........300.........310.........320.........330...
Sequence SHPYTLAHEIGHLLGAEHVDNEQDLMYTWYSPQVTPNHLSADNWVRMLECIQK
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Known secondary structure (DSSP) TSTTT


BS
TTSTTBSB

TT

S





Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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