PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4okmA_

Fold library id	PDB Header	Molecule	Title
c4okmA_	PDB header: transferase	Chain: A: PDB Molecule: terpene synthase metal-binding domain-containing protein;	PDBTitle: selinadiene synthase apo and in complex with diphosphate

Links to external resources
Added to library: Sat Jun 14 08:14:49 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E L T V P P L F S P I R Q A I H P K H A D I D V Q T A A W A E T F R I G S E E L R G K L V T Q D I G T F S A R I L P E G R E E V V S L L A D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S
T T T T
S
T T S
S T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F I L W L F G V D D G H C E E G E L G H R P G D L A G L L H R L I R V A Q N P E A P M M Q D D P L A A G L R D L R M R V D R F G T A G Q T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S G G G G
T T S S S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R W V D A L R E Y F F S V V W E A A H R R A G T V P D L N D Y T L M R L Y D G A T S V V L P M L E M G H G Y E L Q P Y E R D R T A V R A V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T S
T T T T T
T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence E M A S F I I T W D N D I F S Y H K E R R G S G Y Y L N A L R V L E Q E R G L T P A Q A L D A A I S Q R D R V M C L F T T V S E Q L A E Q G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
T
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . .

Sequence S P Q L R Q Y L H S L R C F I R G A Q D W G I S S V R Y T T P D D P A N M P S V F T D V P T D D S T E P L D I P A V S W W W D L L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T S
S
B S S
S
S
T T T G G G G G G

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	L	T	V	P	P	L	F	S	P	I	R	Q	A	I	H	P	K	H	A	D	I	D	V	Q	T	A	A	W	A	E	T	F	R	I	G	S	E	E	L	R	G	K	L	V	T	Q	D	I	G	T	F	S	A	R	I	L	P	E	G	R	E	E	V	V	S	L	L	A	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								B			S						T	T															T	T		S									T	T	S										S	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	I	L	W	L	F	G	V	D	D	G	H	C	E	E	G	E	L	G	H	R	P	G	D	L	A	G	L	L	H	R	L	I	R	V	A	Q	N	P	E	A	P	M	M	Q	D	D	P	L	A	A	G	L	R	D	L	R	M	R	V	D	R	F	G	T	A	G	Q	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	S	G	G	G	G																			T	T	S	S	S	S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	W	V	D	A	L	R	E	Y	F	F	S	V	V	W	E	A	A	H	R	R	A	G	T	V	P	D	L	N	D	Y	T	L	M	R	L	Y	D	G	A	T	S	V	V	L	P	M	L	E	M	G	H	G	Y	E	L	Q	P	Y	E	R	D	R	T	A	V	R	A	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							T																T	S		T	T	T								T	T									T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	E	M	A	S	F	I	I	T	W	D	N	D	I	F	S	Y	H	K	E	R	R	G	S	G	Y	Y	L	N	A	L	R	V	L	E	Q	E	R	G	L	T	P	A	Q	A	L	D	A	A	I	S	Q	R	D	R	V	M	C	L	F	T	T	V	S	E	Q	L	A	E	Q	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T	S	S	S														T																																S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Sequence	S	P	Q	L	R	Q	Y	L	H	S	L	R	C	F	I	R	G	A	Q	D	W	G	I	S	S	V	R	Y	T	T	P	D	D	P	A	N	M	P	S	V	F	T	D	V	P	T	D	D	S	T	E	P	L	D	I	P	A	V	S	W	W	W	D	L	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							T	T	S						T	T	S						S			B	S	S		S								S		T	T	T	G	G	G	G	G	G