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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ok2A_

Fold library idPDB HeaderMoleculeTitle
c4ok2A_PDB header: lyaseChain: A: PDB Molecule: putative alginate lyase;PDBTitle: crystal structure of alg17c mutant y258a


Added to library: Sat Feb 1 08:17:55 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HPNLIVTEQDVANIAASWESYDAYAEQLNADKTNLDAFMAEGVVVPMPKDAGGGYTHEQHKRNYKAIRNA
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Known secondary structure (DSSP)

BSSSBGGG
TT









TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GFLYQVTGDEKYLTFAKDLLLAYAKMYPSLGEHPNRKEQSPGRLFWQSLNEAVWLVYSIQGYDAIIDGLA
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Known secondary structure (DSSP)

TTGGG

S
TT

SS
B
SSSSBGGG

 .........150.........160.........170.........180.........190.........200.........210
Sequence AEEKQEIESGVFLPMAKFLSVESPETFNKIHNHGTWAVAAVGMTGYVLGNDELVEISLMGLDKTGKAGFM
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Known secondary structure (DSSP) TTTT
T
SSTT

TTSSSSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence KQLDKLFSPDGYYTEGPYAQRYALMPFIWFAKAIETNEPERKIFEYRNNILLKAVYTTIDLSYAGYFFPI
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Known secondary structure (DSSP) SB
TT

BTT

GGG
TTTTTT


 .........290.........300.........310.........320.........330.........340.........350
Sequence NDALKDKGIDTVELVHALAIVYSITGDNTLLDIAQEQGRISLTGDGLKVAKAVGEGLTQPYNYRSILLGD
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Known secondary structure (DSSP) SS

TT
BTTS

TTT


SSTT









 .........360.........370.........380.........390.........400.........410.........420
Sequence GADGDQGALSIHRLGEGHNHMALVAKNTSQGMGHGHFDKLNWLLYDNGNEIVTDYGAARYLNVEAKYGGH
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Known secondary structure (DSSP) STTS
SSSSSS



GGG

S
TTTT




S

TT
TTTGGGS
 .........430.........440.........450.........460.........470.........480.........490
Sequence YLAENNTWAKQTIAHNTLVVNEQSHFYGDVTTADLHHPEVLSFYSGEDYQLSSAKEANAYDGVEFVRSML
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Known secondary structure (DSSP)

TTTSGGGTTS
TTB
GGGG
T



SS
SSSTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence LVNVPSLEHPIVVDVLNVSADKASTFDLPLYFNGQIIDFSFKVKDNKNVMKMLGKRNGYQHLWLRNTAPV
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Known secondary structure (DSSP)

TTSSS

B
SSS




TT


BS
SSTTGGG
 .........570.........580.........590.........600.........610.........620.........630
Sequence GDASERATWILDDRFYSYAFVTSTPSKKQNVLIAELGANDPNYNLRQQQVLIRRVEKAKQASFVSVLEPH
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Known secondary structure (DSSP)
SS
TT
S



TT
TT

S


 .........640.........650.........660.........670.........680.........690.........700
Sequence GKYDGSLETTSGAYSNVKSVKHVSENGKDVVVVDLKDGSNVVVALSYNANSEQVHKVNAGEEAIEWKGFS
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Known secondary structure (DSSP)
TTTTS
S
STTTTS





SS

SS
SS
 ......
Sequence SVVVRR
Predicted secondary structure
SS confidence





Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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