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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ohvA_

Fold library idPDB HeaderMoleculeTitle
c4ohvA_PDB header: rna binding proteinChain: A: PDB Molecule: protein clpf-1;PDBTitle: structure of a rna-processing protein


Added to library: Sat May 17 08:19:50 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EENVQEFVLKEDCELRFAAGDDSDVCLELVKGYAEIFGTELLLNKKYTFPAKSRVAAFTWKGATIELVGT
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Known secondary structure (DSSP)



TT
SSS


TT

TT

TT
SS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence TESAYVAESTPXVIYLNIHAAXEEVRKKREEQAKAKGPRLLLVGPTDVGKTTVSRILCNYSVRQGRTPIF
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Known secondary structure (DSSP) S

ST






STTSSTT


 .........150.........160.........170.........180.........190.........200.........210
Sequence VELDVGQNSVSVPGTVAAVLVQKTADVIDGFERNQPIVFNFGHTSPSANLSLYEALFKEXATTLNAQIQE
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Known secondary structure (DSSP)

SSS
SSS
TT

S

BTTTBS


S


SSSGGG
GGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence NDEAKIGGXIINTCGWVDGEGYKCIVKAASAFEVDVVIVLDHERLYSDLSKELPEFVRLTHVPKSGGVEQ
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Known secondary structure (DSSP)



S

STTT
SS
S
TTS


TT


 .........290.........300.........310.........320.........330.........340.........350
Sequence RTGQIRSKXRGENVHRYFYGTRANNLYPFTFDVSFDDVTLCKIGKLVIXEPSADIKHHLFAFSRSTKADE
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Known secondary structure (DSSP)

B
SSSB


GGG





GGGTTSSSSSSG
 .........360.........370.........380.........390......
Sequence NVLKSPVFGFCLVTEVDLEKRTXSILCPQRTIPSKVLVFSDITHLD
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Known secondary structure (DSSP) GGTT

TTTTSSSS
S
S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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