PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4ohnA_

Fold library id	PDB Header	Molecule	Title
c4ohnA_	PDB header: transport protein	Chain: A: PDB Molecule: abc transporter substrate-binding protein;	PDBTitle: crystal structure of an abc uptake transporter substrate binding2 protein from streptococcus pneumoniae with bound histidine

Links to external resources
Added to library: Sat Jan 24 09:45:35 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T S G D N W S K Y Q S N K S I T I G F D S T F V P M G F A Q K D G S Y A G F D I D L A T A V F E K Y G I T V N W Q P I D W D L K E A E L T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T T T
T T S
S T T T
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G T I D L I W N G Y S A T D E R R E K V A F S N S Y M K N E Q V L V T K K S S G I T T A K D M T G K T L G A Q A G S S G Y A D F E A N P E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S
S S
B
T T
G G G T
S G G G G T T
T T S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L K N I V A N K E A N Q Y Q T F N E A L I D L K N D R I D G L L I D R V Y A N Y Y L E A E G V L N D Y N V F T V G L E T E A F A V G S R K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S G G G
S S T T S
S T T
G G G
S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . .

Sequence D T T L V K K I N E A F S S L Y K D G K F Q E I S Q K W F G E D V A T K H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	S	G	D	N	W	S	K	Y	Q	S	N	K	S	I	T	I	G	F	D	S	T	F	V	P	M	G	F	A	Q	K	D	G	S	Y	A	G	F	D	I	D	L	A	T	A	V	F	E	K	Y	G	I	T	V	N	W	Q	P	I	D	W	D	L	K	E	A	E	L	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T		T								T								T			T	T	T					T	T	S				S												T	T	T										G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	T	I	D	L	I	W	N	G	Y	S	A	T	D	E	R	R	E	K	V	A	F	S	N	S	Y	M	K	N	E	Q	V	L	V	T	K	K	S	S	G	I	T	T	A	K	D	M	T	G	K	T	L	G	A	Q	A	G	S	S	G	Y	A	D	F	E	A	N	P	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S		S				S	S		B							T	T																		G	G	G	T			S	G	G	G	G	T	T							T	T	S										T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	K	N	I	V	A	N	K	E	A	N	Q	Y	Q	T	F	N	E	A	L	I	D	L	K	N	D	R	I	D	G	L	L	I	D	R	V	Y	A	N	Y	Y	L	E	A	E	G	V	L	N	D	Y	N	V	F	T	V	G	L	E	T	E	A	F	A	V	G	S	R	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	S	G	G	G						S	S										T	T	S		S																T	T		G	G	G							S												T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Sequence	D	T	T	L	V	K	K	I	N	E	A	F	S	S	L	Y	K	D	G	K	F	Q	E	I	S	Q	K	W	F	G	E	D	V	A	T	K	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S	S											S	S