PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4of0A_

Fold library id	PDB Header	Molecule	Title
c4of0A_	PDB header: cell adhesion	Chain: A: PDB Molecule: protein syg-1, isoform b;	PDBTitle: crystal structure of syg-1 d1-d2, refolded

Links to external resources
Added to library: Sat Feb 22 09:02:00 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q R I V E A P K D T L A A V G E T A I L T C R V E H Q Q G P V Q W X K D D F G L G T D R D K P L P G N K R Y R X V G S A A N G E Y N L E I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S
S
S S
B
S S S B
T T
T T S
T T T T B
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N V T L F D D D D F A C Q I S E S D H A K A V V S S K A K L T V L V R P T P P K I V K S H H S L K A I A G D P I T Q S C L S R K G K P P P T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G
B T T B
B
S
S S
T T S
B S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I G W A I A S D E H G K H I V S W L G E S R S K F E I S Q E T V I A H V N E T T Q V E S S I Y S I X S N L S F I P R P E D D H K Y L I C I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T S S S
T T G G G G
S
G G G T T

. . . . . . . . . 220 . . . . . . . . . 230

Sequence Q H X T F P N K I E V D S V K L S L R Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	R	I	V	E	A	P	K	D	T	L	A	A	V	G	E	T	A	I	L	T	C	R	V	E	H	Q	Q	G	P	V	Q	W	X	K	D	D	F	G	L	G	T	D	R	D	K	P	L	P	G	N	K	R	Y	R	X	V	G	S	A	A	N	G	E	Y	N	L	E	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	S										S			S							S	S		B					S	S	S	B		T	T		T	T					S		T	T	T	T	B						S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	V	T	L	F	D	D	D	D	F	A	C	Q	I	S	E	S	D	H	A	K	A	V	V	S	S	K	A	K	L	T	V	L	V	R	P	T	P	P	K	I	V	K	S	H	H	S	L	K	A	I	A	G	D	P	I	T	Q	S	C	L	S	R	K	G	K	P	P	P	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			G	G	G											B	T	T	B														B								S			S	S						T	T	S												B	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	G	W	A	I	A	S	D	E	H	G	K	H	I	V	S	W	L	G	E	S	R	S	K	F	E	I	S	Q	E	T	V	I	A	H	V	N	E	T	T	Q	V	E	S	S	I	Y	S	I	X	S	N	L	S	F	I	P	R	P	E	D	D	H	K	Y	L	I	C	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S	T	T	S	S	S						T	T	G	G	G	G						S																													G	G	G	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	Q	H	X	T	F	P	N	K	I	E	V	D	S	V	K	L	S	L	R	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S	T	T