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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4oetA_

Fold library idPDB HeaderMoleculeTitle
c4oetA_PDB header: transport proteinChain: A: PDB Molecule: putative peptide abc-transport system periplasmic peptide-PDBTitle: crystal structure of nikz from campylobacter jejuni, unliganded form


Added to library: Sat Oct 4 09:17:44 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KIPKDTLIIAVENEIARINPAYSEDHDAVINLVFSGLTRFDENMSLKPDLAKSWDISKDGLVYDIFLRDD
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Known secondary structure (DSSP)


TTS


S


GGG

SS
TT


S
TT

SS
TTS

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VLWHDGVKFSADDVKFSIEAFKNPKNNSSIYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPK
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Known secondary structure (DSSP)
B
TTS
B


GGG

TTGGGGTTTTSS

TTTTS



 .........150.........160.........170.........180.........190.........200.........210
Sequence HLLENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDKVKTPRLIIKHIFDPSIASAELKNG
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Known secondary structure (DSSP) TTS
TTT
GGGGS


SSSTTT
TT
SSS

S
S


TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNLDNEFLKDLKVRQALNYAVDKESIVKNLLHDYA
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Known secondary structure (DSSP) S
S
GGGGGGTTT
TT
TTSTTTTST

TSTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence FVANHPLERSWANSKNFKIYKYDPKKAEDLLVSAGFKKNKDGNFEKDGKILEFEIWAMSNDPLRVSLAGI
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Known secondary structure (DSSP)
SSTTTTSTT

S







TT

TTS
TT
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence LQSEFRKIGVVSKVVAKPAGSFDYSKVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKK
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Known secondary structure (DSSP) TT

TTSS
TTSSS

SS
TTTTT
GGGBTTT
TT

BTT



 .........430.........440.........450.........460.........470.........480.........490
Sequence VDIALQKARNTSNLEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKTRTLGHHGVGFTWNVY
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Known secondary structure (DSSP) TS


S
STT
B





B
GGGTTTTTTGG
 ....
Sequence EWSK
Predicted secondary structure

SS confidence



Known secondary structure (DSSP) G
B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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