PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4obxD_

Fold library id	PDB Header	Molecule	Title
c4obxD_	PDB header: transferase	Chain: D: PDB Molecule: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase,	PDBTitle: crystal structure of yeast coq5 in the apo form

Links to external resources
Added to library: Sat Aug 9 09:04:46 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S V A N R Y D L M N D V M S L G I H R L W K D H F I N K L D A G K R P N S T T P L N F I D V A G G S G D I A F G L L D H A E S K F G D T E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S
T T
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T M D I V D I N P D M L K E G E K R A M E Q G K Y F K D P R V R F L V S N G E K L E E I D S D S K D I Y T V S F G I R N F T D I Q K G L N T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T S S T T
T T
T T T
T T S
T T
S
G G G
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A Y R V L K P G G I F Y C L E F S K I E N P L M D F A Y Q Q W A K V L P V M G S M I A N D Y D S Y Q Y L V E S I E R F P D Q E T F K S M I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . .

Sequence K A G F K S A G Y E S L T F G I C A I H W G I K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	V	A	N	R	Y	D	L	M	N	D	V	M	S	L	G	I	H	R	L	W	K	D	H	F	I	N	K	L	D	A	G	K	R	P	N	S	T	T	P	L	N	F	I	D	V	A	G	G	S	G	D	I	A	F	G	L	L	D	H	A	E	S	K	F	G	D	T	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	T	T															S			T	T											S		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	M	D	I	V	D	I	N	P	D	M	L	K	E	G	E	K	R	A	M	E	Q	G	K	Y	F	K	D	P	R	V	R	F	L	V	S	N	G	E	K	L	E	E	I	D	S	D	S	K	D	I	Y	T	V	S	F	G	I	R	N	F	T	D	I	Q	K	G	L	N	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S																T	S	S	T	T		T	T								T	T	T		T	T	S		T	T									S		G	G	G		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	Y	R	V	L	K	P	G	G	I	F	Y	C	L	E	F	S	K	I	E	N	P	L	M	D	F	A	Y	Q	Q	W	A	K	V	L	P	V	M	G	S	M	I	A	N	D	Y	D	S	Y	Q	Y	L	V	E	S	I	E	R	F	P	D	Q	E	T	F	K	S	M	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S																							S															S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Sequence	K	A	G	F	K	S	A	G	Y	E	S	L	T	F	G	I	C	A	I	H	W	G	I	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T										G	G	G	T