PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4obmA_

Fold library id	PDB Header	Molecule	Title
c4obmA_	PDB header: transcription regulator	Chain: A: PDB Molecule: uncharacterized protein;	PDBTitle: crystal structure of a hypothetical protein (eubsir_01389) from2 eubacterium siraeum dsm 15702 at 2.15 a resolution

Links to external resources
Added to library: Sat Feb 15 08:18:30 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K D A T V N V S Q N Q T A I F T P D S T Y D F S V L X T L S A D N D K T P D K Y X T I T Y I A K N N T F V L X P Y L P N A V I D G G N T I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
G G G
S S T T S
S T T T T
T T S S S S S B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q I C E Q S G E A E V A K L L S S K T G L S I N K Y I R F T K S T L T E L F D X V G N T T L T V P S E I K Y E N K K D N T V T I I K K G T Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
T T T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I F T A E Q X Y A Y L T L P D Y G V K D E L Y P C K L N A T V I S S F I D Q N F I G T S S K T L D E Y I N F I I N F T N T N I E Q S D Y D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
S
S
T T T T
S
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . .

Sequence K V K A I V Y T L S Q N K S S V T D F Y I P Y G D K S G D D Y I I D D N S W N S A K K A L G T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S
T T
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	D	A	T	V	N	V	S	Q	N	Q	T	A	I	F	T	P	D	S	T	Y	D	F	S	V	L	X	T	L	S	A	D	N	D	K	T	P	D	K	Y	X	T	I	T	Y	I	A	K	N	N	T	F	V	L	X	P	Y	L	P	N	A	V	I	D	G	G	N	T	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	S						G	G	G										S	S	T	T	S			S									T	T	T	T									T	T			S	S	S	S	S	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	I	C	E	Q	S	G	E	A	E	V	A	K	L	L	S	S	K	T	G	L	S	I	N	K	Y	I	R	F	T	K	S	T	L	T	E	L	F	D	X	V	G	N	T	T	L	T	V	P	S	E	I	K	Y	E	N	K	K	D	N	T	V	T	I	I	K	K	G	T	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				S																													S	S							T	T	T	T							S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	F	T	A	E	Q	X	Y	A	Y	L	T	L	P	D	Y	G	V	K	D	E	L	Y	P	C	K	L	N	A	T	V	I	S	S	F	I	D	Q	N	F	I	G	T	S	S	K	T	L	D	E	Y	I	N	F	I	I	N	F	T	N	T	N	I	E	Q	S	D	Y	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T		S			S		S		T	T																			T	T																	S											T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Sequence	K	V	K	A	I	V	Y	T	L	S	Q	N	K	S	S	V	T	D	F	Y	I	P	Y	G	D	K	S	G	D	D	Y	I	I	D	D	N	S	W	N	S	A	K	K	A	L	G	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T									T	S	S		S														T	T																	T