PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4o9kB_

Fold library id	PDB Header	Molecule	Title
c4o9kB_	PDB header: isomerase	Chain: B: PDB Molecule: arabinose 5-phosphate isomerase;	PDBTitle: crystal structure of the cbs pair of a putative d-arabinose 5-2 phosphate isomerase from methylococcus capsulatus in complex with3 cmp-kdo

Links to external resources
Added to library: Sat Jan 25 08:24:24 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R L L T F V R D I X H T G D D T P V I G L E A S V R D A L L E X T A K K L G X T A I V D G A G T I Q G V F T D G D L R R L L E K A Q D I H A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S G G G S
T T
B T S S
T T S B T T
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . .

Sequence T P I T A V X T R S C V T V E G S L L A A E A V R I X E Q K R I N A L P V V E N G R L I G A I N X H D L L R A G V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B G G G T S B S S
T T S B T
S T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	L	L	T	F	V	R	D	I	X	H	T	G	D	D	T	P	V	I	G	L	E	A	S	V	R	D	A	L	L	E	X	T	A	K	K	L	G	X	T	A	I	V	D	G	A	G	T	I	Q	G	V	F	T	D	G	D	L	R	R	L	L	E	K	A	Q	D	I	H	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					B					S			G	G	G	S					T	T		B												T	S	S							T	T	S	B															T	T		S			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Sequence	T	P	I	T	A	V	X	T	R	S	C	V	T	V	E	G	S	L	L	A	A	E	A	V	R	I	X	E	Q	K	R	I	N	A	L	P	V	V	E	N	G	R	L	I	G	A	I	N	X	H	D	L	L	R	A	G	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	B	G	G	G	T	S	B	S	S						T	T	S	B												T		S							T	T														T	T