PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4o8qA_

Fold library id	PDB Header	Molecule	Title
c4o8qA_	PDB header: protein transport	Chain: A: PDB Molecule: coatomer subunit delta;	PDBTitle: crystal structure of bovine mhd domain of the copi delta subunit at2 2.15 a resolution

Links to external resources
Added to library: Sat Jan 10 08:05:27 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S P I N M E S V H M K I E E K I T L T C G R D G G L Q N M E L H G M I M L R I S D D K F G R I R L H V E N E D K K G V Q L Q T H P N V D K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
S
T T S
S
G G G S S
S
T T B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L F T A E S L I G L K N P E K S F P V N S D V G V L K W R L Q T T E E S F I P L T I N C W P S E G C D V N I E Y E L Q E D N L E L N D V V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S S T T S
S S S
G G G
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T I P L P S G V G A P V I G E I D G E Y R H D S R R N T L E W C L P V I D A K N K S G S L E F S I A G Q P N D F F P V Q V S F I S K K N Y C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S T T T T
B B T T B
S
G G G G
S S S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . .

Sequence N I Q V T K V T Q V D G N S P V R F S T E T T F L V D K Y E I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
B

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	P	I	N	M	E	S	V	H	M	K	I	E	E	K	I	T	L	T	C	G	R	D	G	G	L	Q	N	M	E	L	H	G	M	I	M	L	R	I	S	D	D	K	F	G	R	I	R	L	H	V	E	N	E	D	K	K	G	V	Q	L	Q	T	H	P	N	V	D	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	S		S															T	T	S																S		G	G	G	S	S											S								T	T	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	F	T	A	E	S	L	I	G	L	K	N	P	E	K	S	F	P	V	N	S	D	V	G	V	L	K	W	R	L	Q	T	T	E	E	S	F	I	P	L	T	I	N	C	W	P	S	E	G	C	D	V	N	I	E	Y	E	L	Q	E	D	N	L	E	L	N	D	V	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										B	S	S	T	T	S				S	S	S														G	G	G		S																						T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	I	P	L	P	S	G	V	G	A	P	V	I	G	E	I	D	G	E	Y	R	H	D	S	R	R	N	T	L	E	W	C	L	P	V	I	D	A	K	N	K	S	G	S	L	E	F	S	I	A	G	Q	P	N	D	F	F	P	V	Q	V	S	F	I	S	K	K	N	Y	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	S									S	S						T	T	T	T									B	B	T	T	B										S			G	G	G	G		S								S	S		S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Sequence	N	I	Q	V	T	K	V	T	Q	V	D	G	N	S	P	V	R	F	S	T	E	T	T	F	L	V	D	K	Y	E	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	T			B