PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4o6hA_

Fold library id	PDB Header	Molecule	Title
c4o6hA_	PDB header: hydrolase	Chain: A: PDB Molecule: nucleoprotein;	PDBTitle: 2.8a crystal structure of lymphocytic choriomeningitis virus2 nucleoprotein c-terminal domain

Links to external resources
Added to library: Sat Jun 14 08:12:43 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V G L S Y S Q T M L L K D L M G G I D P N A P T W I D I E G R F N D P V E I A I F Q P Q N G Q F I H F Y R E P V D Q K Q F K Q D S K Y S H G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
S S S
T T T T T T
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M D L A D L F N A Q P G L T S S V I G A L P Q G M V L S C Q G S D D I R K L L D S Q N R K D I K L I D V E M T R E A S R E Y E D K V W D K Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T B
T T S
T T
S S T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . .

Sequence G W L C K M H T G I V R D K K K K E I T P H C A L M D C I I F E S A S K A R L P D L K T V H N I L P H D L I F R G P N V V T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S
G G G
T S
S
S S
B
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	G	L	S	Y	S	Q	T	M	L	L	K	D	L	M	G	G	I	D	P	N	A	P	T	W	I	D	I	E	G	R	F	N	D	P	V	E	I	A	I	F	Q	P	Q	N	G	Q	F	I	H	F	Y	R	E	P	V	D	Q	K	Q	F	K	Q	D	S	K	Y	S	H	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															G	G	G	S		S	S	S										T	T										T	T	T	T										S												T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	D	L	A	D	L	F	N	A	Q	P	G	L	T	S	S	V	I	G	A	L	P	Q	G	M	V	L	S	C	Q	G	S	D	D	I	R	K	L	L	D	S	Q	N	R	K	D	I	K	L	I	D	V	E	M	T	R	E	A	S	R	E	Y	E	D	K	V	W	D	K	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	B		T	T									S		T	T						S	S											T	T		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Sequence	G	W	L	C	K	M	H	T	G	I	V	R	D	K	K	K	K	E	I	T	P	H	C	A	L	M	D	C	I	I	F	E	S	A	S	K	A	R	L	P	D	L	K	T	V	H	N	I	L	P	H	D	L	I	F	R	G	P	N	V	V	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G						S					G	G	G																					T	S					S					S	S						B			S