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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4o2wD_

Fold library idPDB HeaderMoleculeTitle
c4o2wD_PDB header: ligaseChain: D: PDB Molecule: e3 ubiquitin-protein ligase herc1;PDBTitle: crystal structure of the third rcc1-like domain of herc1


Added to library: Sat Jan 18 08:40:28 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence CDVYLWGAGRHGQLAEAGRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTVLACGEGSYGRLGQGNSDD
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Known secondary structure (DSSP)


TTSTTGGG
S
GGGTT
SSTTS


GGGTTSSSS


 .........80.........90.........100.........110.........120.........130.........140
Sequence LHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEV
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Known secondary structure (DSSP)
GGGTTS

SSTT
TTS


GGGTT
SSS



GGGTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence VQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGS
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Known secondary structure (DSSP)
SSTT



GGGTT
SSS



GGGTTS

SSTTSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence MVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRA
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Known secondary structure (DSSP)


GGGTT
SSS



GGGSSS

SSTTS

GGGS


TTGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence RNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLVTGLQGKNVR
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Known secondary structure (DSSP) GGTTS

STTTTS

SSTTS


TTSTT
SSS
S

GGGTTS


 .........360....
Sequence QISAGRCHSAAWTA
Predicted secondary structure



SS confidence













Known secondary structure (DSSP)
SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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