PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4nu0B_

Fold library id	PDB Header	Molecule	Title
c4nu0B_	PDB header: transferase	Chain: B: PDB Molecule: adenylate kinase;	PDBTitle: crystal structure of adenylate kinase from streptococcus pneumoniae2 with ap5a

Links to external resources
Added to library: Sat Jul 26 08:24:41 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M N L L I M G L P G A G K G T Q A A K I V E Q F H V A H I S T G D M F R A A M A N Q T E M G V L A K S Y I D K G E L V P D E V T N G I V K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S S
T T
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R L S Q D D I K E T G F L L D G Y P R T I E Q A H A L D K T L A E L G I E L E G I I N I E V N P D S L L E R L S G R I I H R V T G E T F H K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
S
S T
G G G T T T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V F N P P V D Y K E E D Y Y Q R E D D K P E T V K R R L D V N I A Q G E P I I A H Y R A K G L V H D I E G N Q D I N D V F S D I E K V L T N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T B
S S
G G G
T T
S T T T
S S
T

. .

Sequence L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	N	L	L	I	M	G	L	P	G	A	G	K	G	T	Q	A	A	K	I	V	E	Q	F	H	V	A	H	I	S	T	G	D	M	F	R	A	A	M	A	N	Q	T	E	M	G	V	L	A	K	S	Y	I	D	K	G	E	L	V	P	D	E	V	T	N	G	I	V	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	T	T	S	S																													T	T												T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	L	S	Q	D	D	I	K	E	T	G	F	L	L	D	G	Y	P	R	T	I	E	Q	A	H	A	L	D	K	T	L	A	E	L	G	I	E	L	E	G	I	I	N	I	E	V	N	P	D	S	L	L	E	R	L	S	G	R	I	I	H	R	V	T	G	E	T	F	H	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	S	S											S				S															T													G	G	G							T					T	T	T						T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	F	N	P	P	V	D	Y	K	E	E	D	Y	Y	Q	R	E	D	D	K	P	E	T	V	K	R	R	L	D	V	N	I	A	Q	G	E	P	I	I	A	H	Y	R	A	K	G	L	V	H	D	I	E	G	N	Q	D	I	N	D	V	F	S	D	I	E	K	V	L	T	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	B			S	S			G	G	G					T	T		S																								T	T	T								S	S															T
	.	.
Sequence	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)