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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4nsxA_

Fold library idPDB HeaderMoleculeTitle
c4nsxA_PDB header: protein bindingChain: A: PDB Molecule: u3 small nucleolar rna-associated protein 21;PDBTitle: crystal structure of the utp21 tandem wd domain


Added to library: Sat Feb 22 10:18:47 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NSKIFSPFRIIGNVSNGVPFATGTLGSTFYIVTCVGKTFQIYDANTLHLLFVSEKETPSSIVALSAHFHY
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 .........80.........90.........100.........110.........120.........130.........140
Sequence VYAAYENKVGIYKRGIEEHLLELETDANVEHLCIFGDYLCASTDDNSIFIYKKSDPQDKYPSEFYTKLTV
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Known secondary structure (DSSP) TTTT
SSSS
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 .........150.........160.........170.........180.........190.........200.........210
Sequence TEIQGGEIVSLQHLATYLNKLTVVTKSNVLLFNVRTGKLVFTSNEFPDQITTAEPAPVLDIIALGTVTGE
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TTT
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SS

SSTTSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VIMFNMRKGKRIRTIKIPQSRISSLSFRTDGSSHLSVGTSSGDLIFYDLDRRSRIHVLKNIHRESYGGVT
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Known secondary structure (DSSP) TTTT
TT



SSS
TTS
TTTTTTSS
GGGTS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence QATFLNGQPIIVTSGGDNSLKEYVFDPQPPRYLRSRGGHSQPPSYIAFADSQSHFMLSASKDRSLWSFSL
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TTSS
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TTS

 .........360.........370.........380.........390.........400.........410.........420
Sequence RKDAQSQEMSQRSKFPEIVALAIENARIGEWENIITAHKDEKFARTWDMRNKRVGRWTFDTTDDGFVKSV
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Known secondary structure (DSSP) STT


B







STTTTTS

TT
STTTT
SSS

 .........430.........440.........450.........460.........470.........480.........490
Sequence AMSQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGISLDGMNRKMVSCGLDGIVGFYDFNKSTL
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Known secondary structure (DSSP)
TTS
TTSTTT



SS

TTS
TTSSSS

 .........500.........510.........520.........530.........540.........550.........560
Sequence LGKLKLDAPITAMVYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLD
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Known secondary structure (DSSP)
SS
TTTTTTS
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SS

TTSSTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence STIRTWDLPTGGCIDGIIVDNVATNVKFSPNGDLLATTHVTGNGICIWTNRAQSTRTIDESEFARMALPS
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Known secondary structure (DSSP) STTTT
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 ....
Sequence TSVR
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Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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