PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4nqrA_

Fold library id	PDB Header	Molecule	Title
c4nqrA_	PDB header: transport protein	Chain: A: PDB Molecule: amino acid/amide abc transporter substrate-binding protein,	PDBTitle: the crystal structure of a solute-binding protein (n280d mutant) from2 anabaena variabilis atcc 29413 in complex with alanine

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Added to library: Sat Jan 11 09:30:43 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N T I P I G I A L A Q T S N V A L L G Q E Q V A G A K I A E K Y F N D K G G V N G T P I K L I F Q D T A G D E A G T I N A F Q T L I N K D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T T T B T T B
T T S T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V V G I V G P T L S Q Q A F S A N P I A E R A K V P V V G P S N T A K G I P E I G D Y V A R V S A P V S V V A P N S V K A A L K Q N P N I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T
S S
S T T S G G G
T T S S
T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K V A V F F A Q N D A F S K S E T E I F Q Q T V K D Q G L E L V T V Q K F Q T T D T D F Q S Q A T N A I N L K P D L V I I S G L A A D G G N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T
T T
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence L V R Q L R E L G Y Q G A I I G G D G L N T S N V F A V C K A L C D G V L I A Q A Y S P E Y T G E I N K A F R Q A Y V D Q Y K K E P P Q F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
G G G
S G G G G G G G T T
S
T T
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence A Q A F A A V Q V Y V E S L K A L D T K N K V S K I Q L P E L R T E L N K Q L L T G K Y N T P L G E I S F T P I G E V V Q K D F Y V A Q I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G S
T T
T T S

. . . . . . . . . 360 . . . . .

Sequence X E K D G S Q G K F T F L K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	T	I	P	I	G	I	A	L	A	Q	T	S	N	V	A	L	L	G	Q	E	Q	V	A	G	A	K	I	A	E	K	Y	F	N	D	K	G	G	V	N	G	T	P	I	K	L	I	F	Q	D	T	A	G	D	E	A	G	T	I	N	A	F	Q	T	L	I	N	K	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S	T	T																					T	T	T	B	T	T	B										T	T	S														T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	V	G	I	V	G	P	T	L	S	Q	Q	A	F	S	A	N	P	I	A	E	R	A	K	V	P	V	V	G	P	S	N	T	A	K	G	I	P	E	I	G	D	Y	V	A	R	V	S	A	P	V	S	V	V	A	P	N	S	V	K	A	A	L	K	Q	N	P	N	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S						S																T						S	S			S	T	T	S	G	G	G		T	T				S	S							T												T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	V	A	V	F	F	A	Q	N	D	A	F	S	K	S	E	T	E	I	F	Q	Q	T	V	K	D	Q	G	L	E	L	V	T	V	Q	K	F	Q	T	T	D	T	D	F	Q	S	Q	A	T	N	A	I	N	L	K	P	D	L	V	I	I	S	G	L	A	A	D	G	G	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T																		T	T											T	T													T	T			S						S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	L	V	R	Q	L	R	E	L	G	Y	Q	G	A	I	I	G	G	D	G	L	N	T	S	N	V	F	A	V	C	K	A	L	C	D	G	V	L	I	A	Q	A	Y	S	P	E	Y	T	G	E	I	N	K	A	F	R	Q	A	Y	V	D	Q	Y	K	K	E	P	P	Q	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T			S						G	G	G		S	G	G	G					G	G	G	G	T	T						S			T	T																		S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	Q	A	F	A	A	V	Q	V	Y	V	E	S	L	K	A	L	D	T	K	N	K	V	S	K	I	Q	L	P	E	L	R	T	E	L	N	K	Q	L	L	T	G	K	Y	N	T	P	L	G	E	I	S	F	T	P	I	G	E	V	V	Q	K	D	F	Y	V	A	Q	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S		G	G	G	S																					T	T							T	T	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Sequence	X	E	K	D	G	S	Q	G	K	F	T	F	L	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S	S