PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4nooA_

Fold library id	PDB Header	Molecule	Title
c4nooA_	PDB header: immune system	Chain: A: PDB Molecule: vgrg protein;	PDBTitle: molecular mechanism for self-protection against type vi secretion2 system in vibrio cholerae

Links to external resources
Added to library: Sat Apr 12 08:17:46 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I W P L G K T S E K Y E S A G R G P G V I S T G N G D Y G G A S Y G C Y Q X S S N L G V V Q K Y I Q S S K F K E F F S G L N P A T K E F N V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T G G G T T T
T T
S S T T
T T T T T T T T S T T G G G G T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V W Q D I A S R Y P Q E F R E E Q H Q F I K R T H Y D I Q I G H L R G K G L L F E H N R A A V H D L I W S T S V Q F G G R T N L I F N A L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T T
S
B
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200

Sequence G Q N X E S X T D K D I I I L V Q D Y K L V N T E R L F K S S P S W W S D L K K R A V S E K K A L L E L E I D G L E V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T
T T T T
G G G T T
B

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	W	P	L	G	K	T	S	E	K	Y	E	S	A	G	R	G	P	G	V	I	S	T	G	N	G	D	Y	G	G	A	S	Y	G	C	Y	Q	X	S	S	N	L	G	V	V	Q	K	Y	I	Q	S	S	K	F	K	E	F	F	S	G	L	N	P	A	T	K	E	F	N	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	G	G	G					T	T	T			T	T						S	S	T	T						T	T	T	T			T	T	T	T									S	T	T	G	G	G	G	T	T			T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	W	Q	D	I	A	S	R	Y	P	Q	E	F	R	E	E	Q	H	Q	F	I	K	R	T	H	Y	D	I	Q	I	G	H	L	R	G	K	G	L	L	F	E	H	N	R	A	A	V	H	D	L	I	W	S	T	S	V	Q	F	G	G	R	T	N	L	I	F	N	A	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S																T										T	T	T					S		B																T	T								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Sequence	G	Q	N	X	E	S	X	T	D	K	D	I	I	I	L	V	Q	D	Y	K	L	V	N	T	E	R	L	F	K	S	S	P	S	W	W	S	D	L	K	K	R	A	V	S	E	K	K	A	L	L	E	L	E	I	D	G	L	E	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T			S	T	T																	T					T	T	T		G	G	G																					T	T		B