PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4noiA_

Fold library id	PDB Header	Molecule	Title
c4noiA_	PDB header: transferase	Chain: A: PDB Molecule: dna-directed rna polymerase subunit alpha;	PDBTitle: 2.17 angstrom crystal structure of dna-directed rna polymerase subunit2 alpha from campylobacter jejuni.

Links to external resources
Added to library: Sat Dec 7 08:23:22 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I T T S A Y T P T E F T I E N I S D T V A K I S A W P F E I G Y G I T L A H P L R R L L Y T S T I G Y A P T A I H I D G V A H E F D S X R G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S S S T T S S
T T
S T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence X L E D V A L F I I N L K K L R F K I K G D S N K E I V E F S F K G S K E I Y G K D L N N D Q V E V V N K D A Y L A T I N E D A E L K F T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B S S
T T S
S S S
S S S G G G G
S S S S T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I V E K G I G Y V P S E E I K E L I N D P K F I A L D A F F T P V R E A T Y D I E K V L F E D N P D Y E K V V L T V T T D G Q I T P N E A F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
S T T
S S S

. . . . . . . . . 220 . . . . . . .

Sequence Q N A L E A X Y K Q L S V F D K I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G

Download: PDB structure FASTA sequence
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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	T	T	S	A	Y	T	P	T	E	F	T	I	E	N	I	S	D	T	V	A	K	I	S	A	W	P	F	E	I	G	Y	G	I	T	L	A	H	P	L	R	R	L	L	Y	T	S	T	I	G	Y	A	P	T	A	I	H	I	D	G	V	A	H	E	F	D	S	X	R	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S												S	S	S	S											T	T																S	S											T	T			S	T	T				T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	X	L	E	D	V	A	L	F	I	I	N	L	K	K	L	R	F	K	I	K	G	D	S	N	K	E	I	V	E	F	S	F	K	G	S	K	E	I	Y	G	K	D	L	N	N	D	Q	V	E	V	V	N	K	D	A	Y	L	A	T	I	N	E	D	A	E	L	K	F	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B	S	S										T	T	S					S	S	S		S										S	S					G	G	G	G			S	S				S	S	T	T								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	V	E	K	G	I	G	Y	V	P	S	E	E	I	K	E	L	I	N	D	P	K	F	I	A	L	D	A	F	F	T	P	V	R	E	A	T	Y	D	I	E	K	V	L	F	E	D	N	P	D	Y	E	K	V	V	L	T	V	T	T	D	G	Q	I	T	P	N	E	A	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S														T	T	S									S														T	T															S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Sequence	Q	N	A	L	E	A	X	Y	K	Q	L	S	V	F	D	K	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												G	G	G