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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4nn3A_

Fold library idPDB HeaderMoleculeTitle
c4nn3A_PDB header: transport proteinChain: A: PDB Molecule: trap dicarboxylate transporter, dctp subunit;PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio salexigens (desal_2161), target efi-510109, with bound3 orotic acid


Added to library: Sat Dec 7 08:27:02 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KYEARIGHLESPLQPRHQGLEKVAKLVKERTNGEVEFKIFPSSQLGNQRQMNEGVQFGTIEGTVSAAAFL
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Known secondary structure (DSSP)

SS
TTSTTT

TTTT

TSSSGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence GGFNPVVSIMDIPFLLPVDRAKAQELRQGKFGKALLKSFDSRGFKAIATWPNGRKNFTSNKPISTIADYK
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Known secondary structure (DSSP) TTT
GGGGGGGSTT
S
SSTSTGGGT

SS

SSGGGGT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GQSFRVMDSKILIEQFAAIGASAIALPFGELYTALQNGVVDGEENPLDTIQRMKFYEVQKYLVTSEHGAM
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Known secondary structure (DSSP) T

S
TTT


GGGTTSSS
TTGGGS
S


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence EDYVLFNPSYWESLPENYQKIIVDTFIEVMPGVEAHKEQAQKDALEVIKKAGVQVTPLQAADRAAMRELM
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Known secondary structure (DSSP)
S
TT


 .........290.........300.........310.
Sequence YPKTKAAYLARAGAQGQELIKLYEEEYARIV
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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