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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4nmyA_

Fold library idPDB HeaderMoleculeTitle
c4nmyA_PDB header: transport proteinChain: A: PDB Molecule: abc-type transport system, extracellular solute-bindingPDBTitle: crystal structure of the thiamin-bound form of substrate-binding2 protein of abc transporter from clostridium difficile


Added to library: Sat Dec 7 08:30:31 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SKKVTXVLDWTPNTNHTGLFVALDKGYYKEEGLDVEIVQPPESGAETLVATGKADFGISYQEQVTYAKTS
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Known secondary structure (DSSP)

SSSS
GGGTTTT


TT
TTS
S
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence EDPLPIKAVATVIQHNTSGFASPKEKNITTAKDFEGKTYGGWGSPSEEAVFKAVXKKNRADFNKLKIVNT
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Known secondary structure (DSSP) SS

SSSSS

GGG


SGGGGTT



TT

GGG

 .........150.........160.........170.........180.........190.........200.........210
Sequence GQDDFFAAXKTVDFAWIFEGWDAVKADLIGYDLNFIPVKDLDERLDYYTPLIISNETVLKDNPELAKKFL
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Known secondary structure (DSSP) TT

TTTSSBTTTT


GGG



S
 .........220.........230.........240.........250.........260.........270.........280
Sequence KATTKGYEYAIKNPEESAKILVKHAPEVDEKLALKSQEYLASKYKDDAPRWGEXKDSVWNNYTSFLKEYK
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Known secondary structure (DSSP)

TTS
TTSSTT
SSTT


TT
 .........290.........
Sequence LIDKDXKASDAYTNEFLPQ
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Known secondary structure (DSSP)
SSS


B

TTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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